miRNA display CGI


Results 101 - 120 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 42149 0.66 0.896507
Target:  5'- cGCGUCCGgGGuCUG-GAAGAGCa-- -3'
miRNA:   3'- aCGCGGGCgUCuGGCaCUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 13051 0.66 0.896507
Target:  5'- -aUGCCCaGCAGuCCGUGucGcuGCUGCg -3'
miRNA:   3'- acGCGGG-CGUCuGGCACuuCu-UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 64454 0.66 0.901121
Target:  5'- cUGCGCCUcuguccggcagacgGCcgAGACCGUGggGcAC-ACg -3'
miRNA:   3'- -ACGCGGG--------------CG--UCUGGCACuuCuUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 68518 0.66 0.915437
Target:  5'- gUGCGCCCGCGcucggcucuGAgCGUGccGcGCUAg -3'
miRNA:   3'- -ACGCGGGCGU---------CUgGCACuuCuUGAUg -5'
25647 5' -54.9 NC_005337.1 + 1053 0.66 0.909373
Target:  5'- gGCGgCgGgAGGCCGgcgggGgcGGACUGCg -3'
miRNA:   3'- aCGCgGgCgUCUGGCa----CuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 126210 0.66 0.903062
Target:  5'- gGaCGCCaCGCgcgAGugCGUGAuGGAGCUGg -3'
miRNA:   3'- aC-GCGG-GCG---UCugGCACU-UCUUGAUg -5'
25647 5' -54.9 NC_005337.1 + 97699 0.66 0.903062
Target:  5'- cGCGCUgGCGGACCGgcuAGG--UGCg -3'
miRNA:   3'- aCGCGGgCGUCUGGCacuUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 49295 0.67 0.889711
Target:  5'- cGCGCCCggGCGGACCGgcgauaccUGGAGGcCa-- -3'
miRNA:   3'- aCGCGGG--CGUCUGGC--------ACUUCUuGaug -5'
25647 5' -54.9 NC_005337.1 + 2993 0.67 0.882679
Target:  5'- cGCGCCUGC-GACUGgcgGAcGGGCUccgGCa -3'
miRNA:   3'- aCGCGGGCGuCUGGCa--CUuCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 93294 0.69 0.772493
Target:  5'- gGCGCCUGguGGCgGUcgagcuagauGAAGAAgUGCc -3'
miRNA:   3'- aCGCGGGCguCUGgCA----------CUUCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 59671 0.69 0.782005
Target:  5'- gGCGCCCGCGagcacGACCcG-GGAGAGCc-- -3'
miRNA:   3'- aCGCGGGCGU-----CUGG-CaCUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 43840 0.69 0.791377
Target:  5'- cGgGCCgGCGGcGCgGUGGAGAucguguACUGCg -3'
miRNA:   3'- aCgCGGgCGUC-UGgCACUUCU------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 10382 0.68 0.809661
Target:  5'- gGCgGCCaCGCAGcuggugcucggGCUGUGGAGGugcgGCUGCg -3'
miRNA:   3'- aCG-CGG-GCGUC-----------UGGCACUUCU----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 99408 0.68 0.809661
Target:  5'- cUGCGCaCCGCGGGCggcgggugCGUGcuGAGCcGCg -3'
miRNA:   3'- -ACGCG-GGCGUCUG--------GCACuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 99468 0.67 0.874675
Target:  5'- cGCGUgCGCGagggcgucuucguGGCCGUGcGGcGCUACg -3'
miRNA:   3'- aCGCGgGCGU-------------CUGGCACuUCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 48542 0.67 0.875414
Target:  5'- cGCGUCCGCGu-CCGcgacGgcGGACUGCg -3'
miRNA:   3'- aCGCGGGCGUcuGGCa---CuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 29983 0.67 0.875414
Target:  5'- cGCGCCCucGCGGACCGcccgcgcGAAcuccuuGCUGCg -3'
miRNA:   3'- aCGCGGG--CGUCUGGCa------CUUcu----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 121118 0.67 0.882679
Target:  5'- gGCGCCCGCGGAgaUGaUGGAGAu---- -3'
miRNA:   3'- aCGCGGGCGUCUg-GC-ACUUCUugaug -5'
25647 5' -54.9 NC_005337.1 + 1173 0.67 0.882679
Target:  5'- aGCgGCCCGCuAGGCgGUGcgcGAGCgcgGCa -3'
miRNA:   3'- aCG-CGGGCG-UCUGgCACuu-CUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 64332 0.66 0.903062
Target:  5'- aUGCG-CCGCuucgGGAUccgCGUGAAGGAuCUGCg -3'
miRNA:   3'- -ACGCgGGCG----UCUG---GCACUUCUU-GAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.