miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25649 3' -62.6 NC_005337.1 + 53011 0.65 0.609227
Target:  5'- uAGCGGCggcaugaaccugcGGCUgUGCGGGaGcugcCGGCGCa -3'
miRNA:   3'- -UUGCUGa------------CCGAgGCGCCC-Cu---GCCGCG- -5'
25649 3' -62.6 NC_005337.1 + 105259 0.66 0.603313
Target:  5'- cACGGCUuggGGCcgCCGUGGcugacccuGGGCGGcCGCc -3'
miRNA:   3'- uUGCUGA---CCGa-GGCGCC--------CCUGCC-GCG- -5'
25649 3' -62.6 NC_005337.1 + 49975 0.66 0.603313
Target:  5'- cACGAgCUGGCUCaCGgagaaGGuGAUGGUGCa -3'
miRNA:   3'- uUGCU-GACCGAG-GCg----CCcCUGCCGCG- -5'
25649 3' -62.6 NC_005337.1 + 4569 0.66 0.603313
Target:  5'- cAUGAUcuGCUgCCGCGGGcGCGGCGa -3'
miRNA:   3'- uUGCUGacCGA-GGCGCCCcUGCCGCg -5'
25649 3' -62.6 NC_005337.1 + 5748 0.66 0.603313
Target:  5'- gGGCu-CUGGCaCgGCGGcGGGCGGCaGCc -3'
miRNA:   3'- -UUGcuGACCGaGgCGCC-CCUGCCG-CG- -5'
25649 3' -62.6 NC_005337.1 + 2460 0.66 0.603313
Target:  5'- -cCGAgUGGaa-CGCGGGGuccuCGGCGg -3'
miRNA:   3'- uuGCUgACCgagGCGCCCCu---GCCGCg -5'
25649 3' -62.6 NC_005337.1 + 36870 0.66 0.603313
Target:  5'- uGGCGGuuCUGGCUCCgGCGGcaGGAgGGUa- -3'
miRNA:   3'- -UUGCU--GACCGAGG-CGCC--CCUgCCGcg -5'
25649 3' -62.6 NC_005337.1 + 74918 0.66 0.603313
Target:  5'- cGCGGCUGGCggccUUCGCGcGcGCGGcCGCg -3'
miRNA:   3'- uUGCUGACCG----AGGCGCcCcUGCC-GCG- -5'
25649 3' -62.6 NC_005337.1 + 115606 0.66 0.602328
Target:  5'- -cCGACcGGCccucggaUCCGCccgccGGcGGCGGCGCg -3'
miRNA:   3'- uuGCUGaCCG-------AGGCGc----CC-CUGCCGCG- -5'
25649 3' -62.6 NC_005337.1 + 30048 0.66 0.597407
Target:  5'- -cUGGCUGGUgCgCGUGGugaacuuguccccgaGGAUGGCGCg -3'
miRNA:   3'- uuGCUGACCGaG-GCGCC---------------CCUGCCGCG- -5'
25649 3' -62.6 NC_005337.1 + 53901 0.66 0.593475
Target:  5'- cACGACcGGgUCCGCGac--CGGCGCg -3'
miRNA:   3'- uUGCUGaCCgAGGCGCcccuGCCGCG- -5'
25649 3' -62.6 NC_005337.1 + 68289 0.66 0.593475
Target:  5'- uGCGGCcGGC-CgGCGGcguGGACGcGCGUg -3'
miRNA:   3'- uUGCUGaCCGaGgCGCC---CCUGC-CGCG- -5'
25649 3' -62.6 NC_005337.1 + 38921 0.66 0.593475
Target:  5'- cACGAC-GGCUCCcCGGuGucgcagcgccACGGCGCg -3'
miRNA:   3'- uUGCUGaCCGAGGcGCCcC----------UGCCGCG- -5'
25649 3' -62.6 NC_005337.1 + 51769 0.66 0.592492
Target:  5'- gGACGGCcgccccgUGGCguUCCcCGGGugcGACGGCGUu -3'
miRNA:   3'- -UUGCUG-------ACCG--AGGcGCCC---CUGCCGCG- -5'
25649 3' -62.6 NC_005337.1 + 58367 0.66 0.590528
Target:  5'- uGGCGGCcGGCgacaCCuCGGGGugcucgcugguccaGCGGUGCa -3'
miRNA:   3'- -UUGCUGaCCGa---GGcGCCCC--------------UGCCGCG- -5'
25649 3' -62.6 NC_005337.1 + 110139 0.66 0.583662
Target:  5'- uGCGugUGGUUgUGuuGGGAaaGGCGCa -3'
miRNA:   3'- uUGCugACCGAgGCgcCCCUg-CCGCG- -5'
25649 3' -62.6 NC_005337.1 + 98399 0.66 0.583662
Target:  5'- cAAgGACgGGUUCaugGCGGGGACcaccauggagGGCGUc -3'
miRNA:   3'- -UUgCUGaCCGAGg--CGCCCCUG----------CCGCG- -5'
25649 3' -62.6 NC_005337.1 + 128038 0.66 0.573882
Target:  5'- cGACG-CUGaCUCgCGCGGGGACa-CGCu -3'
miRNA:   3'- -UUGCuGACcGAG-GCGCCCCUGccGCG- -5'
25649 3' -62.6 NC_005337.1 + 5318 0.66 0.573882
Target:  5'- cAUGACUGaaaUgUGCGGGGAUugugGGCGCu -3'
miRNA:   3'- uUGCUGACcg-AgGCGCCCCUG----CCGCG- -5'
25649 3' -62.6 NC_005337.1 + 60796 0.66 0.573882
Target:  5'- cGCGACgagcuuggGGUccUCCGCGGGcacGCGGCa- -3'
miRNA:   3'- uUGCUGa-------CCG--AGGCGCCCc--UGCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.