miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25657 3' -59.9 NC_005337.1 + 39192 0.66 0.730173
Target:  5'- gGCCGUCGCCGcGGGCuacgcggaCCCGGAcccgggCGUg -3'
miRNA:   3'- -UGGCAGCGGU-UCCG--------GGGUCUca----GCAg -5'
25657 3' -59.9 NC_005337.1 + 66547 0.66 0.720457
Target:  5'- cGCCG-CGCCGccGGUCCCGGAGgacgacggGUCc -3'
miRNA:   3'- -UGGCaGCGGUu-CCGGGGUCUCag------CAG- -5'
25657 3' -59.9 NC_005337.1 + 59875 0.66 0.720457
Target:  5'- gGCgGU-GCCAGaGCCCCGGAGauguaCGUCu -3'
miRNA:   3'- -UGgCAgCGGUUcCGGGGUCUCa----GCAG- -5'
25657 3' -59.9 NC_005337.1 + 77765 0.66 0.720457
Target:  5'- cCCGcgCGCCucgGGGUCCgCGGAGUUGg- -3'
miRNA:   3'- uGGCa-GCGGu--UCCGGG-GUCUCAGCag -5'
25657 3' -59.9 NC_005337.1 + 10634 0.66 0.720457
Target:  5'- gACCGUcgCGCCGcugcAGaGCUCCAcGAG-CGUCa -3'
miRNA:   3'- -UGGCA--GCGGU----UC-CGGGGU-CUCaGCAG- -5'
25657 3' -59.9 NC_005337.1 + 68172 0.66 0.714591
Target:  5'- uUCGUgGCCGAguacgcccugagcgcGGCCCCGGGGgCGcCg -3'
miRNA:   3'- uGGCAgCGGUU---------------CCGGGGUCUCaGCaG- -5'
25657 3' -59.9 NC_005337.1 + 2364 0.66 0.710667
Target:  5'- uCCG-CGCCAGGuGCUCUAucGGGUgCGUCg -3'
miRNA:   3'- uGGCaGCGGUUC-CGGGGU--CUCA-GCAG- -5'
25657 3' -59.9 NC_005337.1 + 91884 0.66 0.700813
Target:  5'- gGCCGcgCGCCGcGGCgCCuccGGGUCGcCg -3'
miRNA:   3'- -UGGCa-GCGGUuCCGgGGu--CUCAGCaG- -5'
25657 3' -59.9 NC_005337.1 + 14257 0.66 0.68991
Target:  5'- uACCGUCGCaugcAGGCCCUcccuuacgauggcGGAGUgGa- -3'
miRNA:   3'- -UGGCAGCGgu--UCCGGGG-------------UCUCAgCag -5'
25657 3' -59.9 NC_005337.1 + 93802 0.66 0.680946
Target:  5'- -aCGUgGUCGcGGCUCCAGuuUCGUCu -3'
miRNA:   3'- ugGCAgCGGUuCCGGGGUCucAGCAG- -5'
25657 3' -59.9 NC_005337.1 + 91555 0.67 0.67095
Target:  5'- gGCCGUgGCCAcguaccGGuacaCCUCGGGGUCGUa -3'
miRNA:   3'- -UGGCAgCGGUu-----CC----GGGGUCUCAGCAg -5'
25657 3' -59.9 NC_005337.1 + 20579 0.67 0.67095
Target:  5'- uCCGUCuCCAuGGgCUCAGGGUCGg- -3'
miRNA:   3'- uGGCAGcGGUuCCgGGGUCUCAGCag -5'
25657 3' -59.9 NC_005337.1 + 115566 0.67 0.669949
Target:  5'- cGCCGcagcuccUCGCCGGGGCCCgAGcuGcUGUCu -3'
miRNA:   3'- -UGGC-------AGCGGUUCCGGGgUCu-CaGCAG- -5'
25657 3' -59.9 NC_005337.1 + 101208 0.67 0.640811
Target:  5'- cACCGccugcuUCGCgGAGGUCgCGGAGgCGUCc -3'
miRNA:   3'- -UGGC------AGCGgUUCCGGgGUCUCaGCAG- -5'
25657 3' -59.9 NC_005337.1 + 67404 0.67 0.633762
Target:  5'- cGCCGUUGCCGAaguccacGGCCagcaccuugcgcuucUCGGGGUUGUUg -3'
miRNA:   3'- -UGGCAGCGGUU-------CCGG---------------GGUCUCAGCAG- -5'
25657 3' -59.9 NC_005337.1 + 75916 0.67 0.620672
Target:  5'- -gUGUCGCC--GGCCgCCAGGuUCGUCu -3'
miRNA:   3'- ugGCAGCGGuuCCGG-GGUCUcAGCAG- -5'
25657 3' -59.9 NC_005337.1 + 63489 0.68 0.610611
Target:  5'- aGCCGcCGCau-GGCCUCcGAGUCGg- -3'
miRNA:   3'- -UGGCaGCGguuCCGGGGuCUCAGCag -5'
25657 3' -59.9 NC_005337.1 + 98211 0.68 0.600566
Target:  5'- gACCacCGCCAGuuccccucGGCCCCGGGGgccucgcccUCGUCg -3'
miRNA:   3'- -UGGcaGCGGUU--------CCGGGGUCUC---------AGCAG- -5'
25657 3' -59.9 NC_005337.1 + 80509 0.68 0.600566
Target:  5'- gGCCGggggcgggcaCGCCGAGGCCCggggcgCGGAGaUGUCc -3'
miRNA:   3'- -UGGCa---------GCGGUUCCGGG------GUCUCaGCAG- -5'
25657 3' -59.9 NC_005337.1 + 11521 0.68 0.58055
Target:  5'- cGCCGggcagCGCaggguGGCCgCCAG-GUCGUCc -3'
miRNA:   3'- -UGGCa----GCGguu--CCGG-GGUCuCAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.