Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25657 | 3' | -59.9 | NC_005337.1 | + | 50414 | 1.09 | 0.001061 |
Target: 5'- cACCGUCGCCAAGGCCCCAGAGUCGUCg -3' miRNA: 3'- -UGGCAGCGGUUCCGGGGUCUCAGCAG- -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 131195 | 0.78 | 0.154734 |
Target: 5'- gGCCGUCGCCGAGGUgCgCGGAGUCc-- -3' miRNA: 3'- -UGGCAGCGGUUCCGgG-GUCUCAGcag -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 21071 | 0.75 | 0.240548 |
Target: 5'- cGCCGUaGUCGuGGUCCCGGAcGUCGUCg -3' miRNA: 3'- -UGGCAgCGGUuCCGGGGUCU-CAGCAG- -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 75089 | 0.75 | 0.254607 |
Target: 5'- aGCCGUCGCCGGuGCCCCgacgcacggccugggGGAGgaaCGUCg -3' miRNA: 3'- -UGGCAGCGGUUcCGGGG---------------UCUCa--GCAG- -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 70013 | 0.73 | 0.332138 |
Target: 5'- uCCGgcgCGCCcGGGUCCCAGAGcCGcCg -3' miRNA: 3'- uGGCa--GCGGuUCCGGGGUCUCaGCaG- -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 109100 | 0.72 | 0.35482 |
Target: 5'- gGCCGagGCCAGGGCCacaCAGAGcgCGg- -3' miRNA: 3'- -UGGCagCGGUUCCGGg--GUCUCa-GCag -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 11394 | 0.71 | 0.437982 |
Target: 5'- gGCUGaugCGCCAGGGCCCCGG-GUUc-- -3' miRNA: 3'- -UGGCa--GCGGUUCCGGGGUCuCAGcag -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 96751 | 0.7 | 0.444213 |
Target: 5'- uCCGggacaacggggaguUCGCCGAGGUguuCCCGGGGUCGg- -3' miRNA: 3'- uGGC--------------AGCGGUUCCG---GGGUCUCAGCag -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 93606 | 0.7 | 0.446898 |
Target: 5'- cGCCGUCGCCGcgccuagagGGcGCCCCAcuG-CGUCg -3' miRNA: 3'- -UGGCAGCGGU---------UC-CGGGGUcuCaGCAG- -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 72383 | 0.7 | 0.473311 |
Target: 5'- gGCCGUCGCggucagCGAGcCCCCGGGGUggcgcgaCGUCg -3' miRNA: 3'- -UGGCAGCG------GUUCcGGGGUCUCA-------GCAG- -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 11753 | 0.7 | 0.483534 |
Target: 5'- cGCCG-CGCCAGGGCCagCAGcGagGUCu -3' miRNA: 3'- -UGGCaGCGGUUCCGGg-GUCuCagCAG- -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 75201 | 0.7 | 0.492919 |
Target: 5'- gGCCGcgagaccagCGCCAGccaCCCGGAGUCGUCc -3' miRNA: 3'- -UGGCa--------GCGGUUccgGGGUCUCAGCAG- -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 44425 | 0.69 | 0.502387 |
Target: 5'- uGCCGgagCGCCGGGaGCCgccgCCGGAGgaCGUCg -3' miRNA: 3'- -UGGCa--GCGGUUC-CGG----GGUCUCa-GCAG- -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 62407 | 0.69 | 0.511932 |
Target: 5'- cACCGcCGCCuc-GCCCguGGcGUCGUCg -3' miRNA: 3'- -UGGCaGCGGuucCGGGguCU-CAGCAG- -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 107497 | 0.69 | 0.531243 |
Target: 5'- gGCCGUCGUCGAGGa-CguGGGUCG-Ca -3' miRNA: 3'- -UGGCAGCGGUUCCggGguCUCAGCaG- -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 25037 | 0.69 | 0.531243 |
Target: 5'- cGCCGUCGCCAcGGGCCCuccucgCAGA--CGUa -3' miRNA: 3'- -UGGCAGCGGU-UCCGGG------GUCUcaGCAg -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 6008 | 0.69 | 0.540997 |
Target: 5'- gACCGcCGCgugCAGcGGCguccgCCCAGAGUUGUCg -3' miRNA: 3'- -UGGCaGCG---GUU-CCG-----GGGUCUCAGCAG- -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 69490 | 0.69 | 0.540997 |
Target: 5'- cGCCG-CGCgGAGGaCCCCcGGuUCGUCg -3' miRNA: 3'- -UGGCaGCGgUUCC-GGGGuCUcAGCAG- -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 33827 | 0.69 | 0.549826 |
Target: 5'- uCCGUCGCgAAGGgCCguGuuuaugaAGUCGUCc -3' miRNA: 3'- uGGCAGCGgUUCCgGGguC-------UCAGCAG- -5' |
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25657 | 3' | -59.9 | NC_005337.1 | + | 88759 | 0.69 | 0.55081 |
Target: 5'- cCCGaCGCCGAGGaCCCGGAGgCG-Ca -3' miRNA: 3'- uGGCaGCGGUUCCgGGGUCUCaGCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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