miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25657 3' -59.9 NC_005337.1 + 68172 0.66 0.714591
Target:  5'- uUCGUgGCCGAguacgcccugagcgcGGCCCCGGGGgCGcCg -3'
miRNA:   3'- uGGCAgCGGUU---------------CCGGGGUCUCaGCaG- -5'
25657 3' -59.9 NC_005337.1 + 69490 0.69 0.540997
Target:  5'- cGCCG-CGCgGAGGaCCCCcGGuUCGUCg -3'
miRNA:   3'- -UGGCaGCGgUUCC-GGGGuCUcAGCAG- -5'
25657 3' -59.9 NC_005337.1 + 70013 0.73 0.332138
Target:  5'- uCCGgcgCGCCcGGGUCCCAGAGcCGcCg -3'
miRNA:   3'- uGGCa--GCGGuUCCGGGGUCUCaGCaG- -5'
25657 3' -59.9 NC_005337.1 + 72383 0.7 0.473311
Target:  5'- gGCCGUCGCggucagCGAGcCCCCGGGGUggcgcgaCGUCg -3'
miRNA:   3'- -UGGCAGCG------GUUCcGGGGUCUCA-------GCAG- -5'
25657 3' -59.9 NC_005337.1 + 75089 0.75 0.254607
Target:  5'- aGCCGUCGCCGGuGCCCCgacgcacggccugggGGAGgaaCGUCg -3'
miRNA:   3'- -UGGCAGCGGUUcCGGGG---------------UCUCa--GCAG- -5'
25657 3' -59.9 NC_005337.1 + 75201 0.7 0.492919
Target:  5'- gGCCGcgagaccagCGCCAGccaCCCGGAGUCGUCc -3'
miRNA:   3'- -UGGCa--------GCGGUUccgGGGUCUCAGCAG- -5'
25657 3' -59.9 NC_005337.1 + 75916 0.67 0.620672
Target:  5'- -gUGUCGCC--GGCCgCCAGGuUCGUCu -3'
miRNA:   3'- ugGCAGCGGuuCCGG-GGUCUcAGCAG- -5'
25657 3' -59.9 NC_005337.1 + 77765 0.66 0.720457
Target:  5'- cCCGcgCGCCucgGGGUCCgCGGAGUUGg- -3'
miRNA:   3'- uGGCa-GCGGu--UCCGGG-GUCUCAGCag -5'
25657 3' -59.9 NC_005337.1 + 80509 0.68 0.600566
Target:  5'- gGCCGggggcgggcaCGCCGAGGCCCggggcgCGGAGaUGUCc -3'
miRNA:   3'- -UGGCa---------GCGGUUCCGGG------GUCUCaGCAG- -5'
25657 3' -59.9 NC_005337.1 + 88759 0.69 0.55081
Target:  5'- cCCGaCGCCGAGGaCCCGGAGgCG-Ca -3'
miRNA:   3'- uGGCaGCGGUUCCgGGGUCUCaGCaG- -5'
25657 3' -59.9 NC_005337.1 + 91555 0.67 0.67095
Target:  5'- gGCCGUgGCCAcguaccGGuacaCCUCGGGGUCGUa -3'
miRNA:   3'- -UGGCAgCGGUu-----CC----GGGGUCUCAGCAg -5'
25657 3' -59.9 NC_005337.1 + 91884 0.66 0.700813
Target:  5'- gGCCGcgCGCCGcGGCgCCuccGGGUCGcCg -3'
miRNA:   3'- -UGGCa-GCGGUuCCGgGGu--CUCAGCaG- -5'
25657 3' -59.9 NC_005337.1 + 93606 0.7 0.446898
Target:  5'- cGCCGUCGCCGcgccuagagGGcGCCCCAcuG-CGUCg -3'
miRNA:   3'- -UGGCAGCGGU---------UC-CGGGGUcuCaGCAG- -5'
25657 3' -59.9 NC_005337.1 + 93802 0.66 0.680946
Target:  5'- -aCGUgGUCGcGGCUCCAGuuUCGUCu -3'
miRNA:   3'- ugGCAgCGGUuCCGGGGUCucAGCAG- -5'
25657 3' -59.9 NC_005337.1 + 96751 0.7 0.444213
Target:  5'- uCCGggacaacggggaguUCGCCGAGGUguuCCCGGGGUCGg- -3'
miRNA:   3'- uGGC--------------AGCGGUUCCG---GGGUCUCAGCag -5'
25657 3' -59.9 NC_005337.1 + 98211 0.68 0.600566
Target:  5'- gACCacCGCCAGuuccccucGGCCCCGGGGgccucgcccUCGUCg -3'
miRNA:   3'- -UGGcaGCGGUU--------CCGGGGUCUC---------AGCAG- -5'
25657 3' -59.9 NC_005337.1 + 101208 0.67 0.640811
Target:  5'- cACCGccugcuUCGCgGAGGUCgCGGAGgCGUCc -3'
miRNA:   3'- -UGGC------AGCGgUUCCGGgGUCUCaGCAG- -5'
25657 3' -59.9 NC_005337.1 + 107497 0.69 0.531243
Target:  5'- gGCCGUCGUCGAGGa-CguGGGUCG-Ca -3'
miRNA:   3'- -UGGCAGCGGUUCCggGguCUCAGCaG- -5'
25657 3' -59.9 NC_005337.1 + 109100 0.72 0.35482
Target:  5'- gGCCGagGCCAGGGCCacaCAGAGcgCGg- -3'
miRNA:   3'- -UGGCagCGGUUCCGGg--GUCUCa-GCag -5'
25657 3' -59.9 NC_005337.1 + 115566 0.67 0.669949
Target:  5'- cGCCGcagcuccUCGCCGGGGCCCgAGcuGcUGUCu -3'
miRNA:   3'- -UGGC-------AGCGGUUCCGGGgUCu-CaGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.