miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25657 3' -59.9 NC_005337.1 + 91555 0.67 0.67095
Target:  5'- gGCCGUgGCCAcguaccGGuacaCCUCGGGGUCGUa -3'
miRNA:   3'- -UGGCAgCGGUu-----CC----GGGGUCUCAGCAg -5'
25657 3' -59.9 NC_005337.1 + 93802 0.66 0.680946
Target:  5'- -aCGUgGUCGcGGCUCCAGuuUCGUCu -3'
miRNA:   3'- ugGCAgCGGUuCCGGGGUCucAGCAG- -5'
25657 3' -59.9 NC_005337.1 + 91884 0.66 0.700813
Target:  5'- gGCCGcgCGCCGcGGCgCCuccGGGUCGcCg -3'
miRNA:   3'- -UGGCa-GCGGUuCCGgGGu--CUCAGCaG- -5'
25657 3' -59.9 NC_005337.1 + 2364 0.66 0.710667
Target:  5'- uCCG-CGCCAGGuGCUCUAucGGGUgCGUCg -3'
miRNA:   3'- uGGCaGCGGUUC-CGGGGU--CUCA-GCAG- -5'
25657 3' -59.9 NC_005337.1 + 10634 0.66 0.720457
Target:  5'- gACCGUcgCGCCGcugcAGaGCUCCAcGAG-CGUCa -3'
miRNA:   3'- -UGGCA--GCGGU----UC-CGGGGU-CUCaGCAG- -5'
25657 3' -59.9 NC_005337.1 + 66547 0.66 0.720457
Target:  5'- cGCCG-CGCCGccGGUCCCGGAGgacgacggGUCc -3'
miRNA:   3'- -UGGCaGCGGUu-CCGGGGUCUCag------CAG- -5'
25657 3' -59.9 NC_005337.1 + 77765 0.66 0.720457
Target:  5'- cCCGcgCGCCucgGGGUCCgCGGAGUUGg- -3'
miRNA:   3'- uGGCa-GCGGu--UCCGGG-GUCUCAGCag -5'
25657 3' -59.9 NC_005337.1 + 39192 0.66 0.730173
Target:  5'- gGCCGUCGCCGcGGGCuacgcggaCCCGGAcccgggCGUg -3'
miRNA:   3'- -UGGCAGCGGU-UCCG--------GGGUCUca----GCAg -5'
25657 3' -59.9 NC_005337.1 + 98211 0.68 0.600566
Target:  5'- gACCacCGCCAGuuccccucGGCCCCGGGGgccucgcccUCGUCg -3'
miRNA:   3'- -UGGcaGCGGUU--------CCGGGGUCUC---------AGCAG- -5'
25657 3' -59.9 NC_005337.1 + 11521 0.68 0.58055
Target:  5'- cGCCGggcagCGCaggguGGCCgCCAG-GUCGUCc -3'
miRNA:   3'- -UGGCa----GCGguu--CCGG-GGUCuCAGCAG- -5'
25657 3' -59.9 NC_005337.1 + 131195 0.78 0.154734
Target:  5'- gGCCGUCGCCGAGGUgCgCGGAGUCc-- -3'
miRNA:   3'- -UGGCAGCGGUUCCGgG-GUCUCAGcag -5'
25657 3' -59.9 NC_005337.1 + 75089 0.75 0.254607
Target:  5'- aGCCGUCGCCGGuGCCCCgacgcacggccugggGGAGgaaCGUCg -3'
miRNA:   3'- -UGGCAGCGGUUcCGGGG---------------UCUCa--GCAG- -5'
25657 3' -59.9 NC_005337.1 + 70013 0.73 0.332138
Target:  5'- uCCGgcgCGCCcGGGUCCCAGAGcCGcCg -3'
miRNA:   3'- uGGCa--GCGGuUCCGGGGUCUCaGCaG- -5'
25657 3' -59.9 NC_005337.1 + 11394 0.71 0.437982
Target:  5'- gGCUGaugCGCCAGGGCCCCGG-GUUc-- -3'
miRNA:   3'- -UGGCa--GCGGUUCCGGGGUCuCAGcag -5'
25657 3' -59.9 NC_005337.1 + 72383 0.7 0.473311
Target:  5'- gGCCGUCGCggucagCGAGcCCCCGGGGUggcgcgaCGUCg -3'
miRNA:   3'- -UGGCAGCG------GUUCcGGGGUCUCA-------GCAG- -5'
25657 3' -59.9 NC_005337.1 + 11753 0.7 0.483534
Target:  5'- cGCCG-CGCCAGGGCCagCAGcGagGUCu -3'
miRNA:   3'- -UGGCaGCGGUUCCGGg-GUCuCagCAG- -5'
25657 3' -59.9 NC_005337.1 + 107497 0.69 0.531243
Target:  5'- gGCCGUCGUCGAGGa-CguGGGUCG-Ca -3'
miRNA:   3'- -UGGCAGCGGUUCCggGguCUCAGCaG- -5'
25657 3' -59.9 NC_005337.1 + 6008 0.69 0.540997
Target:  5'- gACCGcCGCgugCAGcGGCguccgCCCAGAGUUGUCg -3'
miRNA:   3'- -UGGCaGCG---GUU-CCG-----GGGUCUCAGCAG- -5'
25657 3' -59.9 NC_005337.1 + 88759 0.69 0.55081
Target:  5'- cCCGaCGCCGAGGaCCCGGAGgCG-Ca -3'
miRNA:   3'- uGGCaGCGGUUCCgGGGUCUCaGCaG- -5'
25657 3' -59.9 NC_005337.1 + 2868 0.69 0.554751
Target:  5'- aGCCGcgCGCCAGcgggaacacgaucacGGCCCCGcGGUCGa- -3'
miRNA:   3'- -UGGCa-GCGGUU---------------CCGGGGUcUCAGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.