miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25657 5' -57 NC_005337.1 + 115155 0.66 0.849026
Target:  5'- cGGAGGCCUGcguccgacaGAagcUCCCUGACAucguGGa- -3'
miRNA:   3'- aCCUCUGGGC---------CU---AGGGACUGUu---CCag -5'
25657 5' -57 NC_005337.1 + 55780 0.66 0.849026
Target:  5'- cGGAuauccuacGACaCCgGGAUCCUggugGAgAAGGUCa -3'
miRNA:   3'- aCCU--------CUG-GG-CCUAGGGa---CUgUUCCAG- -5'
25657 5' -57 NC_005337.1 + 122877 0.66 0.849026
Target:  5'- cGGA-ACCCGGggCCCUGGCGc---- -3'
miRNA:   3'- aCCUcUGGGCCuaGGGACUGUuccag -5'
25657 5' -57 NC_005337.1 + 82190 0.66 0.840965
Target:  5'- -cGAGGCUggaGGAUCCgCUGGgGAGGUa -3'
miRNA:   3'- acCUCUGGg--CCUAGG-GACUgUUCCAg -5'
25657 5' -57 NC_005337.1 + 88030 0.66 0.840965
Target:  5'- aGGAuGugCCGGcgCaCgUGcACGGGGUCg -3'
miRNA:   3'- aCCU-CugGGCCuaG-GgAC-UGUUCCAG- -5'
25657 5' -57 NC_005337.1 + 111692 0.66 0.836037
Target:  5'- cGGcgacGACCCGGAagaggucgUCCCUGaACcgcgcguccgcggugAAGGUCu -3'
miRNA:   3'- aCCu---CUGGGCCU--------AGGGAC-UG---------------UUCCAG- -5'
25657 5' -57 NC_005337.1 + 38296 0.66 0.832714
Target:  5'- gGGGGACuCCGuGUCCaagGugGAGGUg -3'
miRNA:   3'- aCCUCUG-GGCcUAGGga-CugUUCCAg -5'
25657 5' -57 NC_005337.1 + 47645 0.66 0.831041
Target:  5'- cGGAGuucgcugugacgaGCCCGGcgCCCggcaugcUGGCGGGcGUCc -3'
miRNA:   3'- aCCUC-------------UGGGCCuaGGG-------ACUGUUC-CAG- -5'
25657 5' -57 NC_005337.1 + 42574 0.66 0.824279
Target:  5'- cUGGAGGCCgCGGggCUCUccGugAAGG-Cg -3'
miRNA:   3'- -ACCUCUGG-GCCuaGGGA--CugUUCCaG- -5'
25657 5' -57 NC_005337.1 + 117820 0.66 0.824279
Target:  5'- gUGGc-GCCCGGGgaCCCgGGCGGGGUg -3'
miRNA:   3'- -ACCucUGGGCCUa-GGGaCUGUUCCAg -5'
25657 5' -57 NC_005337.1 + 112416 0.67 0.80689
Target:  5'- cGGuAGGCCUGGAUCgCgGACGAGa-- -3'
miRNA:   3'- aCC-UCUGGGCCUAGgGaCUGUUCcag -5'
25657 5' -57 NC_005337.1 + 85288 0.67 0.80689
Target:  5'- cGGcGACCUGcuGGUCCUUGACGGuGGUg -3'
miRNA:   3'- aCCuCUGGGC--CUAGGGACUGUU-CCAg -5'
25657 5' -57 NC_005337.1 + 126228 0.67 0.80689
Target:  5'- aGGAGGCCCGuGUCCguuucgaUGAacAGGUCc -3'
miRNA:   3'- aCCUCUGGGCcUAGGg------ACUguUCCAG- -5'
25657 5' -57 NC_005337.1 + 74837 0.67 0.770272
Target:  5'- gUGGAGcGCCaguuGUCCCgaacGGCGAGGUCa -3'
miRNA:   3'- -ACCUC-UGGgcc-UAGGGa---CUGUUCCAG- -5'
25657 5' -57 NC_005337.1 + 115161 0.68 0.760785
Target:  5'- cUGGAGAUgCCGGcgCCCgcgGACGccGGcGUCc -3'
miRNA:   3'- -ACCUCUG-GGCCuaGGGa--CUGU--UC-CAG- -5'
25657 5' -57 NC_005337.1 + 38709 0.68 0.741477
Target:  5'- cGGcGGCCCGucgUCCUGACGGGGg- -3'
miRNA:   3'- aCCuCUGGGCcuaGGGACUGUUCCag -5'
25657 5' -57 NC_005337.1 + 86100 0.68 0.721785
Target:  5'- cGGAGACgcacuCCGGGUCCCaGcacucGCGGGGcUCg -3'
miRNA:   3'- aCCUCUG-----GGCCUAGGGaC-----UGUUCC-AG- -5'
25657 5' -57 NC_005337.1 + 91251 0.69 0.701784
Target:  5'- aGGuGGACCUGGAUCagCUGcGCGAGGcCa -3'
miRNA:   3'- aCC-UCUGGGCCUAGg-GAC-UGUUCCaG- -5'
25657 5' -57 NC_005337.1 + 44521 0.69 0.69169
Target:  5'- cGGGGugCCc-AUCUCgGACGAGGUCa -3'
miRNA:   3'- aCCUCugGGccUAGGGaCUGUUCCAG- -5'
25657 5' -57 NC_005337.1 + 87342 0.7 0.650905
Target:  5'- cUGGAGAgCCGGAUgaCgUUGuccuCGAGGUCg -3'
miRNA:   3'- -ACCUCUgGGCCUA--GgGACu---GUUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.