Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25657 | 5' | -57 | NC_005337.1 | + | 111692 | 0.66 | 0.836037 |
Target: 5'- cGGcgacGACCCGGAagaggucgUCCCUGaACcgcgcguccgcggugAAGGUCu -3' miRNA: 3'- aCCu---CUGGGCCU--------AGGGAC-UG---------------UUCCAG- -5' |
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25657 | 5' | -57 | NC_005337.1 | + | 112416 | 0.67 | 0.80689 |
Target: 5'- cGGuAGGCCUGGAUCgCgGACGAGa-- -3' miRNA: 3'- aCC-UCUGGGCCUAGgGaCUGUUCcag -5' |
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25657 | 5' | -57 | NC_005337.1 | + | 115155 | 0.66 | 0.849026 |
Target: 5'- cGGAGGCCUGcguccgacaGAagcUCCCUGACAucguGGa- -3' miRNA: 3'- aCCUCUGGGC---------CU---AGGGACUGUu---CCag -5' |
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25657 | 5' | -57 | NC_005337.1 | + | 115161 | 0.68 | 0.760785 |
Target: 5'- cUGGAGAUgCCGGcgCCCgcgGACGccGGcGUCc -3' miRNA: 3'- -ACCUCUG-GGCCuaGGGa--CUGU--UC-CAG- -5' |
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25657 | 5' | -57 | NC_005337.1 | + | 117820 | 0.66 | 0.824279 |
Target: 5'- gUGGc-GCCCGGGgaCCCgGGCGGGGUg -3' miRNA: 3'- -ACCucUGGGCCUa-GGGaCUGUUCCAg -5' |
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25657 | 5' | -57 | NC_005337.1 | + | 122508 | 0.7 | 0.613974 |
Target: 5'- gGGuGACCCGGAgaccucgcugcuggCCCUGGCGcGG-Cg -3' miRNA: 3'- aCCuCUGGGCCUa-------------GGGACUGUuCCaG- -5' |
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25657 | 5' | -57 | NC_005337.1 | + | 122877 | 0.66 | 0.849026 |
Target: 5'- cGGA-ACCCGGggCCCUGGCGc---- -3' miRNA: 3'- aCCUcUGGGCCuaGGGACUGUuccag -5' |
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25657 | 5' | -57 | NC_005337.1 | + | 122985 | 0.7 | 0.640649 |
Target: 5'- gUGGAGACCCGGAaCaugggCgugGGCGAGGg- -3' miRNA: 3'- -ACCUCUGGGCCUaGg----Ga--CUGUUCCag -5' |
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25657 | 5' | -57 | NC_005337.1 | + | 126228 | 0.67 | 0.80689 |
Target: 5'- aGGAGGCCCGuGUCCguuucgaUGAacAGGUCc -3' miRNA: 3'- aCCUCUGGGCcUAGGg------ACUguUCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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