miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25657 5' -57 NC_005337.1 + 2528 0.71 0.538978
Target:  5'- cGGAGGCCCGGAcgUCCgGGCcccGGGUg -3'
miRNA:   3'- aCCUCUGGGCCUa-GGGaCUGu--UCCAg -5'
25657 5' -57 NC_005337.1 + 122877 0.66 0.849026
Target:  5'- cGGA-ACCCGGggCCCUGGCGc---- -3'
miRNA:   3'- aCCUcUGGGCCuaGGGACUGUuccag -5'
25657 5' -57 NC_005337.1 + 82190 0.66 0.840965
Target:  5'- -cGAGGCUggaGGAUCCgCUGGgGAGGUa -3'
miRNA:   3'- acCUCUGGg--CCUAGG-GACUgUUCCAg -5'
25657 5' -57 NC_005337.1 + 88030 0.66 0.840965
Target:  5'- aGGAuGugCCGGcgCaCgUGcACGGGGUCg -3'
miRNA:   3'- aCCU-CugGGCCuaG-GgAC-UGUUCCAG- -5'
25657 5' -57 NC_005337.1 + 47645 0.66 0.831041
Target:  5'- cGGAGuucgcugugacgaGCCCGGcgCCCggcaugcUGGCGGGcGUCc -3'
miRNA:   3'- aCCUC-------------UGGGCCuaGGG-------ACUGUUC-CAG- -5'
25657 5' -57 NC_005337.1 + 42574 0.66 0.824279
Target:  5'- cUGGAGGCCgCGGggCUCUccGugAAGG-Cg -3'
miRNA:   3'- -ACCUCUGG-GCCuaGGGA--CugUUCCaG- -5'
25657 5' -57 NC_005337.1 + 74837 0.67 0.770272
Target:  5'- gUGGAGcGCCaguuGUCCCgaacGGCGAGGUCa -3'
miRNA:   3'- -ACCUC-UGGgcc-UAGGGa---CUGUUCCAG- -5'
25657 5' -57 NC_005337.1 + 115161 0.68 0.760785
Target:  5'- cUGGAGAUgCCGGcgCCCgcgGACGccGGcGUCc -3'
miRNA:   3'- -ACCUCUG-GGCCuaGGGa--CUGU--UC-CAG- -5'
25657 5' -57 NC_005337.1 + 38709 0.68 0.741477
Target:  5'- cGGcGGCCCGucgUCCUGACGGGGg- -3'
miRNA:   3'- aCCuCUGGGCcuaGGGACUGUUCCag -5'
25657 5' -57 NC_005337.1 + 122985 0.7 0.640649
Target:  5'- gUGGAGACCCGGAaCaugggCgugGGCGAGGg- -3'
miRNA:   3'- -ACCUCUGGGCCUaGg----Ga--CUGUUCCag -5'
25657 5' -57 NC_005337.1 + 96530 0.7 0.620127
Target:  5'- gGGuuGCUCGGGUCCUUGGgAAGGa- -3'
miRNA:   3'- aCCucUGGGCCUAGGGACUgUUCCag -5'
25657 5' -57 NC_005337.1 + 122508 0.7 0.613974
Target:  5'- gGGuGACCCGGAgaccucgcugcuggCCCUGGCGcGG-Cg -3'
miRNA:   3'- aCCuCUGGGCCUa-------------GGGACUGUuCCaG- -5'
25657 5' -57 NC_005337.1 + 91251 0.69 0.701784
Target:  5'- aGGuGGACCUGGAUCagCUGcGCGAGGcCa -3'
miRNA:   3'- aCC-UCUGGGCCUAGg-GAC-UGUUCCaG- -5'
25657 5' -57 NC_005337.1 + 44521 0.69 0.69169
Target:  5'- cGGGGugCCc-AUCUCgGACGAGGUCa -3'
miRNA:   3'- aCCUCugGGccUAGGGaCUGUUCCAG- -5'
25657 5' -57 NC_005337.1 + 87342 0.7 0.650905
Target:  5'- cUGGAGAgCCGGAUgaCgUUGuccuCGAGGUCg -3'
miRNA:   3'- -ACCUCUgGGCCUA--GgGACu---GUUCCAG- -5'
25657 5' -57 NC_005337.1 + 13910 0.7 0.620127
Target:  5'- cGGcAGGCgcgCCGGGUCCCgaagGACGcguucaugAGGUCg -3'
miRNA:   3'- aCC-UCUG---GGCCUAGGGa---CUGU--------UCCAG- -5'
25657 5' -57 NC_005337.1 + 101718 0.72 0.519194
Target:  5'- cGGAGGCCCGcacugCCCUGACGugccGGGa- -3'
miRNA:   3'- aCCUCUGGGCcua--GGGACUGU----UCCag -5'
25657 5' -57 NC_005337.1 + 79775 0.73 0.461747
Target:  5'- cGGAGGCCCccaggcgcGGGUCCUucacggUGcCGAGGUCg -3'
miRNA:   3'- aCCUCUGGG--------CCUAGGG------ACuGUUCCAG- -5'
25657 5' -57 NC_005337.1 + 14495 0.74 0.39075
Target:  5'- cGGGGACCa-GAUCCCUG-CGAGGcUCu -3'
miRNA:   3'- aCCUCUGGgcCUAGGGACuGUUCC-AG- -5'
25657 5' -57 NC_005337.1 + 115155 0.66 0.849026
Target:  5'- cGGAGGCCUGcguccgacaGAagcUCCCUGACAucguGGa- -3'
miRNA:   3'- aCCUCUGGGC---------CU---AGGGACUGUu---CCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.