miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25659 3' -53.7 NC_005337.1 + 117803 0.66 0.941266
Target:  5'- uAGUGGGCaugaacgGCGUgGCGCCCg-GGGACc -3'
miRNA:   3'- cUCAUUCGa------UGUA-CGCGGGgaCUCUG- -5'
25659 3' -53.7 NC_005337.1 + 127989 0.66 0.936312
Target:  5'- cGAGUGuggaacuGCUGCG-GCuGCUCCUG-GACg -3'
miRNA:   3'- -CUCAUu------CGAUGUaCG-CGGGGACuCUG- -5'
25659 3' -53.7 NC_005337.1 + 25046 0.66 0.919898
Target:  5'- cGAG-GAGCUGC-UGCGCgCCgUGcGGGCg -3'
miRNA:   3'- -CUCaUUCGAUGuACGCG-GGgAC-UCUG- -5'
25659 3' -53.7 NC_005337.1 + 66071 0.66 0.919898
Target:  5'- aGGcGGGCccGCAgcgGCGCCCCcGGGGCc -3'
miRNA:   3'- cUCaUUCGa-UGUa--CGCGGGGaCUCUG- -5'
25659 3' -53.7 NC_005337.1 + 83331 0.66 0.919898
Target:  5'- ---gGGGCgcgGCGcgagGCGCCCCggGAGGCc -3'
miRNA:   3'- cucaUUCGa--UGUa---CGCGGGGa-CUCUG- -5'
25659 3' -53.7 NC_005337.1 + 130642 0.67 0.913909
Target:  5'- aAGcUGGGCgcggACGUGCGCgCgaGGGACg -3'
miRNA:   3'- cUC-AUUCGa---UGUACGCGgGgaCUCUG- -5'
25659 3' -53.7 NC_005337.1 + 61819 0.67 0.907662
Target:  5'- uAGUAGGag--AUGCGCCCCUuGAGcACg -3'
miRNA:   3'- cUCAUUCgaugUACGCGGGGA-CUC-UG- -5'
25659 3' -53.7 NC_005337.1 + 52204 0.67 0.880154
Target:  5'- -cGUccGCUACAUcaCGCCCC-GGGACg -3'
miRNA:   3'- cuCAuuCGAUGUAc-GCGGGGaCUCUG- -5'
25659 3' -53.7 NC_005337.1 + 18719 0.68 0.872666
Target:  5'- cGAG-GAGCUGCGgcgcgcugGCGCCUCUGAc-- -3'
miRNA:   3'- -CUCaUUCGAUGUa-------CGCGGGGACUcug -5'
25659 3' -53.7 NC_005337.1 + 128808 0.69 0.831857
Target:  5'- cGGGUGcGGCUGCGcccUGC-CCCCgGAGAUg -3'
miRNA:   3'- -CUCAU-UCGAUGU---ACGcGGGGaCUCUG- -5'
25659 3' -53.7 NC_005337.1 + 114241 0.71 0.695267
Target:  5'- uGGGUGAuaucGgUACAUGCaGCCgCUGGGACa -3'
miRNA:   3'- -CUCAUU----CgAUGUACG-CGGgGACUCUG- -5'
25659 3' -53.7 NC_005337.1 + 100793 0.71 0.68158
Target:  5'- cGAG-GAGuCUACGUGCGCCuggcgcacgucgugCCUGAGAa -3'
miRNA:   3'- -CUCaUUC-GAUGUACGCGG--------------GGACUCUg -5'
25659 3' -53.7 NC_005337.1 + 104708 0.72 0.663572
Target:  5'- cGAG-GAGCUGC-UGUGCCaCCUGAGcaGCg -3'
miRNA:   3'- -CUCaUUCGAUGuACGCGG-GGACUC--UG- -5'
25659 3' -53.7 NC_005337.1 + 39537 0.74 0.547066
Target:  5'- cGGUcguGGCUGCcgGCGCCCCggcGGGCg -3'
miRNA:   3'- cUCAu--UCGAUGuaCGCGGGGac-UCUG- -5'
25659 3' -53.7 NC_005337.1 + 49405 1.1 0.002944
Target:  5'- cGAGUAAGCUACAUGCGCCCCUGAGACu -3'
miRNA:   3'- -CUCAUUCGAUGUACGCGGGGACUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.