Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25659 | 3' | -53.7 | NC_005337.1 | + | 49405 | 1.1 | 0.002944 |
Target: 5'- cGAGUAAGCUACAUGCGCCCCUGAGACu -3' miRNA: 3'- -CUCAUUCGAUGUACGCGGGGACUCUG- -5' |
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25659 | 3' | -53.7 | NC_005337.1 | + | 39537 | 0.74 | 0.547066 |
Target: 5'- cGGUcguGGCUGCcgGCGCCCCggcGGGCg -3' miRNA: 3'- cUCAu--UCGAUGuaCGCGGGGac-UCUG- -5' |
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25659 | 3' | -53.7 | NC_005337.1 | + | 104708 | 0.72 | 0.663572 |
Target: 5'- cGAG-GAGCUGC-UGUGCCaCCUGAGcaGCg -3' miRNA: 3'- -CUCaUUCGAUGuACGCGG-GGACUC--UG- -5' |
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25659 | 3' | -53.7 | NC_005337.1 | + | 100793 | 0.71 | 0.68158 |
Target: 5'- cGAG-GAGuCUACGUGCGCCuggcgcacgucgugCCUGAGAa -3' miRNA: 3'- -CUCaUUC-GAUGUACGCGG--------------GGACUCUg -5' |
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25659 | 3' | -53.7 | NC_005337.1 | + | 114241 | 0.71 | 0.695267 |
Target: 5'- uGGGUGAuaucGgUACAUGCaGCCgCUGGGACa -3' miRNA: 3'- -CUCAUU----CgAUGUACG-CGGgGACUCUG- -5' |
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25659 | 3' | -53.7 | NC_005337.1 | + | 128808 | 0.69 | 0.831857 |
Target: 5'- cGGGUGcGGCUGCGcccUGC-CCCCgGAGAUg -3' miRNA: 3'- -CUCAU-UCGAUGU---ACGcGGGGaCUCUG- -5' |
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25659 | 3' | -53.7 | NC_005337.1 | + | 18719 | 0.68 | 0.872666 |
Target: 5'- cGAG-GAGCUGCGgcgcgcugGCGCCUCUGAc-- -3' miRNA: 3'- -CUCaUUCGAUGUa-------CGCGGGGACUcug -5' |
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25659 | 3' | -53.7 | NC_005337.1 | + | 61819 | 0.67 | 0.907662 |
Target: 5'- uAGUAGGag--AUGCGCCCCUuGAGcACg -3' miRNA: 3'- cUCAUUCgaugUACGCGGGGA-CUC-UG- -5' |
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25659 | 3' | -53.7 | NC_005337.1 | + | 52204 | 0.67 | 0.880154 |
Target: 5'- -cGUccGCUACAUcaCGCCCC-GGGACg -3' miRNA: 3'- cuCAuuCGAUGUAc-GCGGGGaCUCUG- -5' |
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25659 | 3' | -53.7 | NC_005337.1 | + | 130642 | 0.67 | 0.913909 |
Target: 5'- aAGcUGGGCgcggACGUGCGCgCgaGGGACg -3' miRNA: 3'- cUC-AUUCGa---UGUACGCGgGgaCUCUG- -5' |
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25659 | 3' | -53.7 | NC_005337.1 | + | 66071 | 0.66 | 0.919898 |
Target: 5'- aGGcGGGCccGCAgcgGCGCCCCcGGGGCc -3' miRNA: 3'- cUCaUUCGa-UGUa--CGCGGGGaCUCUG- -5' |
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25659 | 3' | -53.7 | NC_005337.1 | + | 25046 | 0.66 | 0.919898 |
Target: 5'- cGAG-GAGCUGC-UGCGCgCCgUGcGGGCg -3' miRNA: 3'- -CUCaUUCGAUGuACGCG-GGgAC-UCUG- -5' |
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25659 | 3' | -53.7 | NC_005337.1 | + | 127989 | 0.66 | 0.936312 |
Target: 5'- cGAGUGuggaacuGCUGCG-GCuGCUCCUG-GACg -3' miRNA: 3'- -CUCAUu------CGAUGUaCG-CGGGGACuCUG- -5' |
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25659 | 3' | -53.7 | NC_005337.1 | + | 83331 | 0.66 | 0.919898 |
Target: 5'- ---gGGGCgcgGCGcgagGCGCCCCggGAGGCc -3' miRNA: 3'- cucaUUCGa--UGUa---CGCGGGGa-CUCUG- -5' |
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25659 | 3' | -53.7 | NC_005337.1 | + | 117803 | 0.66 | 0.941266 |
Target: 5'- uAGUGGGCaugaacgGCGUgGCGCCCg-GGGACc -3' miRNA: 3'- cUCAUUCGa------UGUA-CGCGGGgaCUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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