Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25659 | 5' | -54.8 | NC_005337.1 | + | 105132 | 0.79 | 0.265712 |
Target: 5'- -cGCUCCGGAcggccgucgccgacaUGGUGCUGCuGGCGCUg -3' miRNA: 3'- caUGAGGUCU---------------ACCAUGGCGuCCGUGA- -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 29635 | 0.82 | 0.180352 |
Target: 5'- cUugUCCAGcgugaGGUGCCGCAGGCGCa -3' miRNA: 3'- cAugAGGUCua---CCAUGGCGUCCGUGa -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 49448 | 1.07 | 0.003955 |
Target: 5'- uGUACUCCAGAUGGUACCGCAGGCACUc -3' miRNA: 3'- -CAUGAGGUCUACCAUGGCGUCCGUGA- -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 6859 | 0.67 | 0.866544 |
Target: 5'- -cACggucgCCAGGUGGUGCaGCAGcGUGCg -3' miRNA: 3'- caUGa----GGUCUACCAUGgCGUC-CGUGa -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 89166 | 0.67 | 0.865775 |
Target: 5'- gGUGCUCCgcgucgucugcuuAGggGGUGCCG--GGCGCUc -3' miRNA: 3'- -CAUGAGG-------------UCuaCCAUGGCguCCGUGA- -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 22851 | 0.67 | 0.858752 |
Target: 5'- -cGCUCguGcUGG-ACCGCGGcGCGCUc -3' miRNA: 3'- caUGAGguCuACCaUGGCGUC-CGUGA- -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 97090 | 0.68 | 0.82462 |
Target: 5'- cGUGC-CCAaccgcauGcUGGUGCCGCAguGGCGCUc -3' miRNA: 3'- -CAUGaGGU-------CuACCAUGGCGU--CCGUGA- -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 42511 | 0.69 | 0.79301 |
Target: 5'- cUGCUCCcGGAgacggacaUGGUguucccgccggacgcGCUGCGGGCGCUg -3' miRNA: 3'- cAUGAGG-UCU--------ACCA---------------UGGCGUCCGUGA- -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 11689 | 0.72 | 0.595323 |
Target: 5'- cGUGgUCCAGGUGGaaguccguUGCCGUGGGCGu- -3' miRNA: 3'- -CAUgAGGUCUACC--------AUGGCGUCCGUga -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 34407 | 0.67 | 0.866544 |
Target: 5'- gGUGCUCCAGGgcaGGcccgACCGCcuGGCGg- -3' miRNA: 3'- -CAUGAGGUCUa--CCa---UGGCGu-CCGUga -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 96079 | 0.67 | 0.866544 |
Target: 5'- -gGCUCCGGcguacacgGGgcaCGCGGGCGCg -3' miRNA: 3'- caUGAGGUCua------CCaugGCGUCCGUGa -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 68117 | 0.66 | 0.902059 |
Target: 5'- cGUACUCgGGGUcgcGGgGCCGguGGcCGCg -3' miRNA: 3'- -CAUGAGgUCUA---CCaUGGCguCC-GUGa -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 26453 | 0.66 | 0.90844 |
Target: 5'- aGUGCUcCCAGA-GGUACagacaG-AGGCACg -3' miRNA: 3'- -CAUGA-GGUCUaCCAUGg----CgUCCGUGa -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 77368 | 0.66 | 0.90844 |
Target: 5'- -aGCcCCGGAUcccgcGGUGCCGCAacaccagccGGCGCc -3' miRNA: 3'- caUGaGGUCUA-----CCAUGGCGU---------CCGUGa -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 31521 | 0.66 | 0.90844 |
Target: 5'- --cCUCCGGGUGGaugguggGCUgguaguuguacaGCAGGCGCg -3' miRNA: 3'- cauGAGGUCUACCa------UGG------------CGUCCGUGa -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 110332 | 0.66 | 0.91397 |
Target: 5'- -gGCccggCCGGgcGGcgucgcgcgcgccUGCCGCGGGCGCg -3' miRNA: 3'- caUGa---GGUCuaCC-------------AUGGCGUCCGUGa -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 42388 | 0.66 | 0.914571 |
Target: 5'- -gAC-CCGGA-GGcGCCGCGGcGCGCg -3' miRNA: 3'- caUGaGGUCUaCCaUGGCGUC-CGUGa -5' |
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25659 | 5' | -54.8 | NC_005337.1 | + | 49423 | 0.75 | 0.43504 |
Target: 5'- cGUGCUUCGGAUGGUgcuccgaaacgcgGCCGCGuGCGCg -3' miRNA: 3'- -CAUGAGGUCUACCA-------------UGGCGUcCGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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