miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25659 5' -54.8 NC_005337.1 + 49423 0.75 0.43504
Target:  5'- cGUGCUUCGGAUGGUgcuccgaaacgcgGCCGCGuGCGCg -3'
miRNA:   3'- -CAUGAGGUCUACCA-------------UGGCGUcCGUGa -5'
25659 5' -54.8 NC_005337.1 + 42388 0.66 0.914571
Target:  5'- -gAC-CCGGA-GGcGCCGCGGcGCGCg -3'
miRNA:   3'- caUGaGGUCUaCCaUGGCGUC-CGUGa -5'
25659 5' -54.8 NC_005337.1 + 110332 0.66 0.91397
Target:  5'- -gGCccggCCGGgcGGcgucgcgcgcgccUGCCGCGGGCGCg -3'
miRNA:   3'- caUGa---GGUCuaCC-------------AUGGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 31521 0.66 0.90844
Target:  5'- --cCUCCGGGUGGaugguggGCUgguaguuguacaGCAGGCGCg -3'
miRNA:   3'- cauGAGGUCUACCa------UGG------------CGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 77368 0.66 0.90844
Target:  5'- -aGCcCCGGAUcccgcGGUGCCGCAacaccagccGGCGCc -3'
miRNA:   3'- caUGaGGUCUA-----CCAUGGCGU---------CCGUGa -5'
25659 5' -54.8 NC_005337.1 + 26453 0.66 0.90844
Target:  5'- aGUGCUcCCAGA-GGUACagacaG-AGGCACg -3'
miRNA:   3'- -CAUGA-GGUCUaCCAUGg----CgUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 68117 0.66 0.902059
Target:  5'- cGUACUCgGGGUcgcGGgGCCGguGGcCGCg -3'
miRNA:   3'- -CAUGAGgUCUA---CCaUGGCguCC-GUGa -5'
25659 5' -54.8 NC_005337.1 + 96079 0.67 0.866544
Target:  5'- -gGCUCCGGcguacacgGGgcaCGCGGGCGCg -3'
miRNA:   3'- caUGAGGUCua------CCaugGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 34407 0.67 0.866544
Target:  5'- gGUGCUCCAGGgcaGGcccgACCGCcuGGCGg- -3'
miRNA:   3'- -CAUGAGGUCUa--CCa---UGGCGu-CCGUga -5'
25659 5' -54.8 NC_005337.1 + 11689 0.72 0.595323
Target:  5'- cGUGgUCCAGGUGGaaguccguUGCCGUGGGCGu- -3'
miRNA:   3'- -CAUgAGGUCUACC--------AUGGCGUCCGUga -5'
25659 5' -54.8 NC_005337.1 + 42511 0.69 0.79301
Target:  5'- cUGCUCCcGGAgacggacaUGGUguucccgccggacgcGCUGCGGGCGCUg -3'
miRNA:   3'- cAUGAGG-UCU--------ACCA---------------UGGCGUCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 97090 0.68 0.82462
Target:  5'- cGUGC-CCAaccgcauGcUGGUGCCGCAguGGCGCUc -3'
miRNA:   3'- -CAUGaGGU-------CuACCAUGGCGU--CCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 22851 0.67 0.858752
Target:  5'- -cGCUCguGcUGG-ACCGCGGcGCGCUc -3'
miRNA:   3'- caUGAGguCuACCaUGGCGUC-CGUGA- -5'
25659 5' -54.8 NC_005337.1 + 89166 0.67 0.865775
Target:  5'- gGUGCUCCgcgucgucugcuuAGggGGUGCCG--GGCGCUc -3'
miRNA:   3'- -CAUGAGG-------------UCuaCCAUGGCguCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 6859 0.67 0.866544
Target:  5'- -cACggucgCCAGGUGGUGCaGCAGcGUGCg -3'
miRNA:   3'- caUGa----GGUCUACCAUGgCGUC-CGUGa -5'
25659 5' -54.8 NC_005337.1 + 130509 0.66 0.910922
Target:  5'- cUGCUCgUGGGaggucauggaguuccUGGUGCgCGCGGGCGCc -3'
miRNA:   3'- cAUGAG-GUCU---------------ACCAUG-GCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 29635 0.82 0.180352
Target:  5'- cUugUCCAGcgugaGGUGCCGCAGGCGCa -3'
miRNA:   3'- cAugAGGUCua---CCAUGGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 105132 0.79 0.265712
Target:  5'- -cGCUCCGGAcggccgucgccgacaUGGUGCUGCuGGCGCUg -3'
miRNA:   3'- caUGAGGUCU---------------ACCAUGGCGuCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 11399 0.74 0.483463
Target:  5'- aUGCgCCAGGgccccgGGUuCCGCAGGCGCg -3'
miRNA:   3'- cAUGaGGUCUa-----CCAuGGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 107074 0.72 0.574462
Target:  5'- -gGCgcgCCAGggGGUGCCGCuGuGCGCg -3'
miRNA:   3'- caUGa--GGUCuaCCAUGGCGuC-CGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.