miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25659 5' -54.8 NC_005337.1 + 97090 0.68 0.82462
Target:  5'- cGUGC-CCAaccgcauGcUGGUGCCGCAguGGCGCUc -3'
miRNA:   3'- -CAUGaGGU-------CuACCAUGGCGU--CCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 82611 0.68 0.807717
Target:  5'- -gGCgUCCAGG-GGcgACgGCGGGCGCUg -3'
miRNA:   3'- caUG-AGGUCUaCCa-UGgCGUCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 42511 0.69 0.79301
Target:  5'- cUGCUCCcGGAgacggacaUGGUguucccgccggacgcGCUGCGGGCGCUg -3'
miRNA:   3'- cAUGAGG-UCU--------ACCA---------------UGGCGUCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 85386 0.69 0.78927
Target:  5'- -aACUCCAGGugcgUGGUcugGCCGCcGGGCGg- -3'
miRNA:   3'- caUGAGGUCU----ACCA---UGGCG-UCCGUga -5'
25659 5' -54.8 NC_005337.1 + 4561 0.69 0.779818
Target:  5'- -aGCUCCcgcauGAucUGcUGCCGCGGGCGCg -3'
miRNA:   3'- caUGAGGu----CU--ACcAUGGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 44636 0.69 0.779818
Target:  5'- cUGCUCCuGAUcGUGCgccgcaGCGGGCGCUa -3'
miRNA:   3'- cAUGAGGuCUAcCAUGg-----CGUCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 115195 0.69 0.760504
Target:  5'- --cCUCCuGGAcacGGUGCCGCugcGGGCGCUg -3'
miRNA:   3'- cauGAGG-UCUa--CCAUGGCG---UCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 105466 0.69 0.750662
Target:  5'- --cUUCCGGGUGGUcguGCUGC-GGCGCa -3'
miRNA:   3'- cauGAGGUCUACCA---UGGCGuCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 11539 0.7 0.720516
Target:  5'- -gGCcgCCAGGUcGU-CCGCGGGCACg -3'
miRNA:   3'- caUGa-GGUCUAcCAuGGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 18901 0.71 0.657281
Target:  5'- --cUUCCAGGUGcGUGcuccccaccacguCCGCGGGCACg -3'
miRNA:   3'- cauGAGGUCUAC-CAU-------------GGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 98686 0.71 0.647832
Target:  5'- gGUGCUCCGGcgGGgauCCGCcucgcuAGGCAUc -3'
miRNA:   3'- -CAUGAGGUCuaCCau-GGCG------UCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 11689 0.72 0.595323
Target:  5'- cGUGgUCCAGGUGGaaguccguUGCCGUGGGCGu- -3'
miRNA:   3'- -CAUgAGGUCUACC--------AUGGCGUCCGUga -5'
25659 5' -54.8 NC_005337.1 + 107074 0.72 0.574462
Target:  5'- -gGCgcgCCAGggGGUGCCGCuGuGCGCg -3'
miRNA:   3'- caUGa--GGUCuaCCAUGGCGuC-CGUGa -5'
25659 5' -54.8 NC_005337.1 + 11399 0.74 0.483463
Target:  5'- aUGCgCCAGGgccccgGGUuCCGCAGGCGCg -3'
miRNA:   3'- cAUGaGGUCUa-----CCAuGGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 49423 0.75 0.43504
Target:  5'- cGUGCUUCGGAUGGUgcuccgaaacgcgGCCGCGuGCGCg -3'
miRNA:   3'- -CAUGAGGUCUACCA-------------UGGCGUcCGUGa -5'
25659 5' -54.8 NC_005337.1 + 105132 0.79 0.265712
Target:  5'- -cGCUCCGGAcggccgucgccgacaUGGUGCUGCuGGCGCUg -3'
miRNA:   3'- caUGAGGUCU---------------ACCAUGGCGuCCGUGA- -5'
25659 5' -54.8 NC_005337.1 + 29635 0.82 0.180352
Target:  5'- cUugUCCAGcgugaGGUGCCGCAGGCGCa -3'
miRNA:   3'- cAugAGGUCua---CCAUGGCGUCCGUGa -5'
25659 5' -54.8 NC_005337.1 + 49448 1.07 0.003955
Target:  5'- uGUACUCCAGAUGGUACCGCAGGCACUc -3'
miRNA:   3'- -CAUGAGGUCUACCAUGGCGUCCGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.