miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 3' -51.6 NC_005337.1 + 84107 0.67 0.961337
Target:  5'- gGGCGCggUCGCCGucuguuucgAGUcGUUCGGGa-- -3'
miRNA:   3'- -CCGUGa-AGCGGU---------UCGaCAAGUCCaug -5'
25660 3' -51.6 NC_005337.1 + 83694 0.66 0.979237
Target:  5'- cGGCGCgUCGCgaCAGGCc-UUCAGGcGCg -3'
miRNA:   3'- -CCGUGaAGCG--GUUCGacAAGUCCaUG- -5'
25660 3' -51.6 NC_005337.1 + 80436 0.66 0.98016
Target:  5'- cGGCGCgcagCGCCAGccgguccgaggagacGCUGUugaaguacuUCGGGaGCa -3'
miRNA:   3'- -CCGUGaa--GCGGUU---------------CGACA---------AGUCCaUG- -5'
25660 3' -51.6 NC_005337.1 + 79586 0.66 0.976792
Target:  5'- uGUugU-CGCCGAGCU--UCAGcGUGCu -3'
miRNA:   3'- cCGugAaGCGGUUCGAcaAGUC-CAUG- -5'
25660 3' -51.6 NC_005337.1 + 79261 0.67 0.964883
Target:  5'- aGCACgaagUCGCCcucagacuGCUGguacccCGGGUACg -3'
miRNA:   3'- cCGUGa---AGCGGuu------CGACaa----GUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 78321 0.68 0.944692
Target:  5'- uGGC-CcgCGCCAAGCUG--CAGGUcCa -3'
miRNA:   3'- -CCGuGaaGCGGUUCGACaaGUCCAuG- -5'
25660 3' -51.6 NC_005337.1 + 75738 0.71 0.819665
Target:  5'- aGGCACUUCcCCGGGgaGgcCAGGaUGCg -3'
miRNA:   3'- -CCGUGAAGcGGUUCgaCaaGUCC-AUG- -5'
25660 3' -51.6 NC_005337.1 + 69735 0.66 0.974143
Target:  5'- cGGCACggUGCCGGGCgagcUUAagcGGUGCa -3'
miRNA:   3'- -CCGUGaaGCGGUUCGaca-AGU---CCAUG- -5'
25660 3' -51.6 NC_005337.1 + 69175 0.67 0.961337
Target:  5'- aGCACaUCGCCAAGCacgUgAGcGUGCu -3'
miRNA:   3'- cCGUGaAGCGGUUCGacaAgUC-CAUG- -5'
25660 3' -51.6 NC_005337.1 + 67997 0.74 0.711491
Target:  5'- cGGCGCgugCGCCAccaGGCUuUUCAGGUu- -3'
miRNA:   3'- -CCGUGaa-GCGGU---UCGAcAAGUCCAug -5'
25660 3' -51.6 NC_005337.1 + 67186 0.71 0.845798
Target:  5'- -uCACggCGCCGGGCUGca-AGGUGCu -3'
miRNA:   3'- ccGUGaaGCGGUUCGACaagUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 65752 0.66 0.983546
Target:  5'- cGGCACgcucagaGCCGAGCg---CGGGcGCa -3'
miRNA:   3'- -CCGUGaag----CGGUUCGacaaGUCCaUG- -5'
25660 3' -51.6 NC_005337.1 + 65289 0.66 0.976792
Target:  5'- cGGCGC-UCGCCAAGgaGga-GGGcaagcUGCg -3'
miRNA:   3'- -CCGUGaAGCGGUUCgaCaagUCC-----AUG- -5'
25660 3' -51.6 NC_005337.1 + 62075 0.73 0.762616
Target:  5'- gGGUgg-UCGUCGgcgaAGUUGUUCAGGUACa -3'
miRNA:   3'- -CCGugaAGCGGU----UCGACAAGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 60887 0.7 0.892128
Target:  5'- cGGCGUUUCGUCGGGCgUGUgugCGGGcACg -3'
miRNA:   3'- -CCGUGAAGCGGUUCG-ACAa--GUCCaUG- -5'
25660 3' -51.6 NC_005337.1 + 58976 0.69 0.92394
Target:  5'- cGGCAgUUcaCGC--AGCUGUUCcGGGUGCu -3'
miRNA:   3'- -CCGUgAA--GCGguUCGACAAG-UCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 54421 0.7 0.894909
Target:  5'- gGGCAUg--GgCAAGCUGUgcuacgugcccuacaUCGGGUACa -3'
miRNA:   3'- -CCGUGaagCgGUUCGACA---------------AGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 53919 0.69 0.899005
Target:  5'- cGGCGCgaaCGCgu-GCUgGUUCAGGUAUc -3'
miRNA:   3'- -CCGUGaa-GCGguuCGA-CAAGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 51762 0.67 0.971279
Target:  5'- uGGCGCUggacggcCGCCccguGGC-GUUCcccGGGUGCg -3'
miRNA:   3'- -CCGUGAa------GCGGu---UCGaCAAG---UCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 48065 1.14 0.002973
Target:  5'- cGGCACUUCGCCAAGCUGUUCAGGUACg -3'
miRNA:   3'- -CCGUGAAGCGGUUCGACAAGUCCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.