miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 3' -51.6 NC_005337.1 + 45633 0.67 0.957157
Target:  5'- uGCAgUUCGCCAgcAGCuucaugaUGUggAGGUACu -3'
miRNA:   3'- cCGUgAAGCGGU--UCG-------ACAagUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 44461 0.7 0.862169
Target:  5'- aGCGCcUCGCCGAGCUggaggccaGUUCgAGGcGCg -3'
miRNA:   3'- cCGUGaAGCGGUUCGA--------CAAG-UCCaUG- -5'
25660 3' -51.6 NC_005337.1 + 39550 0.68 0.944692
Target:  5'- cGGCGCccCGgCGGGCgc-UCGGGUACu -3'
miRNA:   3'- -CCGUGaaGCgGUUCGacaAGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 38822 0.7 0.862169
Target:  5'- gGGCGCUaCGCCGcGCUGgaCGcGUACg -3'
miRNA:   3'- -CCGUGAaGCGGUuCGACaaGUcCAUG- -5'
25660 3' -51.6 NC_005337.1 + 38486 0.69 0.92394
Target:  5'- gGGCGCgcgcgUCGCCGAGCUGgcCGacgACg -3'
miRNA:   3'- -CCGUGa----AGCGGUUCGACaaGUccaUG- -5'
25660 3' -51.6 NC_005337.1 + 38233 0.66 0.976792
Target:  5'- uGUuCUUCGCCGAGUaGggCGGGcGCg -3'
miRNA:   3'- cCGuGAAGCGGUUCGaCaaGUCCaUG- -5'
25660 3' -51.6 NC_005337.1 + 23782 0.68 0.953515
Target:  5'- aGCGCcaCGUCGAGCUGgcCcGGUACc -3'
miRNA:   3'- cCGUGaaGCGGUUCGACaaGuCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 20781 0.66 0.977795
Target:  5'- cGCGCUUCGCgGggacgggcgugccggAGCUGgaCAGGa-- -3'
miRNA:   3'- cCGUGAAGCGgU---------------UCGACaaGUCCaug -5'
25660 3' -51.6 NC_005337.1 + 12635 0.69 0.918097
Target:  5'- gGGuCGCcgcgUCGUCGAuGCcgugggUGUUCAGGUACg -3'
miRNA:   3'- -CC-GUGa---AGCGGUU-CG------ACAAGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 10384 0.68 0.944692
Target:  5'- cGGCcacgcaGCUggUGCuCGGGCUGUggAGGUGCg -3'
miRNA:   3'- -CCG------UGAa-GCG-GUUCGACAagUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 8371 0.66 0.976792
Target:  5'- cGGCACgagcucccaaUgGCCAGGCUGUgCAGcaccguguuGUGCa -3'
miRNA:   3'- -CCGUGa---------AgCGGUUCGACAaGUC---------CAUG- -5'
25660 3' -51.6 NC_005337.1 + 6856 0.77 0.531061
Target:  5'- cGGCACggUCGCCAGGUgGUgcagCAGcGUGCg -3'
miRNA:   3'- -CCGUGa-AGCGGUUCGaCAa---GUC-CAUG- -5'
25660 3' -51.6 NC_005337.1 + 2354 0.71 0.819665
Target:  5'- cGGCGCacgauccgCGCCAGGUgcucuaUCGGGUGCg -3'
miRNA:   3'- -CCGUGaa------GCGGUUCGaca---AGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 2284 0.68 0.939896
Target:  5'- cGCACUggGUCAGGCUGcggcggggUCGGGaGCg -3'
miRNA:   3'- cCGUGAagCGGUUCGACa-------AGUCCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.