Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25660 | 3' | -51.6 | NC_005337.1 | + | 75738 | 0.71 | 0.819665 |
Target: 5'- aGGCACUUCcCCGGGgaGgcCAGGaUGCg -3' miRNA: 3'- -CCGUGAAGcGGUUCgaCaaGUCC-AUG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 67186 | 0.71 | 0.845798 |
Target: 5'- -uCACggCGCCGGGCUGca-AGGUGCu -3' miRNA: 3'- ccGUGaaGCGGUUCGACaagUCCAUG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 44461 | 0.7 | 0.862169 |
Target: 5'- aGCGCcUCGCCGAGCUggaggccaGUUCgAGGcGCg -3' miRNA: 3'- cCGUGaAGCGGUUCGA--------CAAG-UCCaUG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 97232 | 0.7 | 0.877629 |
Target: 5'- cGGCACUUCGCCAacgacgAGUUcugUCGGGc-- -3' miRNA: 3'- -CCGUGAAGCGGU------UCGAca-AGUCCaug -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 38486 | 0.69 | 0.92394 |
Target: 5'- gGGCGCgcgcgUCGCCGAGCUGgcCGacgACg -3' miRNA: 3'- -CCGUGa----AGCGGUUCGACaaGUccaUG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 127586 | 0.69 | 0.918097 |
Target: 5'- gGGCGCagccguggacgUCGCCGAGUcGUgcugUGGGUGCa -3' miRNA: 3'- -CCGUGa----------AGCGGUUCGaCAa---GUCCAUG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 53919 | 0.69 | 0.899005 |
Target: 5'- cGGCGCgaaCGCgu-GCUgGUUCAGGUAUc -3' miRNA: 3'- -CCGUGaa-GCGguuCGA-CAAGUCCAUG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 60887 | 0.7 | 0.892128 |
Target: 5'- cGGCGUUUCGUCGGGCgUGUgugCGGGcACg -3' miRNA: 3'- -CCGUGAAGCGGUUCG-ACAa--GUCCaUG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 96762 | 0.7 | 0.885001 |
Target: 5'- gGGgAgUUCGCCGAGgUGUUCccgGGGUcgGCg -3' miRNA: 3'- -CCgUgAAGCGGUUCgACAAG---UCCA--UG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 12635 | 0.69 | 0.918097 |
Target: 5'- gGGuCGCcgcgUCGUCGAuGCcgugggUGUUCAGGUACg -3' miRNA: 3'- -CC-GUGa---AGCGGUU-CG------ACAAGUCCAUG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 105599 | 0.69 | 0.905627 |
Target: 5'- cGGgACUUCGCCGAGg---UCGGGgccgGCg -3' miRNA: 3'- -CCgUGAAGCGGUUCgacaAGUCCa---UG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 54421 | 0.7 | 0.894909 |
Target: 5'- gGGCAUg--GgCAAGCUGUgcuacgugcccuacaUCGGGUACa -3' miRNA: 3'- -CCGUGaagCgGUUCGACA---------------AGUCCAUG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 115596 | 0.7 | 0.862169 |
Target: 5'- uGUAC-UCGCUgcccGGGCUGcgCGGGUACg -3' miRNA: 3'- cCGUGaAGCGG----UUCGACaaGUCCAUG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 38822 | 0.7 | 0.862169 |
Target: 5'- gGGCGCUaCGCCGcGCUGgaCGcGUACg -3' miRNA: 3'- -CCGUGAaGCGGUuCGACaaGUcCAUG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 115340 | 0.71 | 0.828575 |
Target: 5'- cGGauguccCGCCu-GCUGUUCGGGUACg -3' miRNA: 3'- -CCgugaa-GCGGuuCGACAAGUCCAUG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 2354 | 0.71 | 0.819665 |
Target: 5'- cGGCGCacgauccgCGCCAGGUgcucuaUCGGGUGCg -3' miRNA: 3'- -CCGUGaa------GCGGUUCGaca---AGUCCAUG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 131984 | 0.72 | 0.791851 |
Target: 5'- aGCugUUCGCCAAGCUccuGUUCGGc--- -3' miRNA: 3'- cCGugAAGCGGUUCGA---CAAGUCcaug -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 88485 | 0.74 | 0.673456 |
Target: 5'- cGCGCU-CGCCAAGCUGUcugccgUCAuggacagcgccgcgcGGUACg -3' miRNA: 3'- cCGUGAaGCGGUUCGACA------AGU---------------CCAUG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 109390 | 0.78 | 0.481328 |
Target: 5'- aGGCuaugucaacacuguuCUUCGagAAGCUGUUCGGGUGCa -3' miRNA: 3'- -CCGu--------------GAAGCggUUCGACAAGUCCAUG- -5' |
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25660 | 3' | -51.6 | NC_005337.1 | + | 117032 | 0.66 | 0.983546 |
Target: 5'- gGGCGCU--GCCGAcGCUG--CAGGUGg -3' miRNA: 3'- -CCGUGAagCGGUU-CGACaaGUCCAUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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