miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 3' -51.6 NC_005337.1 + 48065 1.14 0.002973
Target:  5'- cGGCACUUCGCCAAGCUGUUCAGGUACg -3'
miRNA:   3'- -CCGUGAAGCGGUUCGACAAGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 128155 0.67 0.971279
Target:  5'- aGCAUgUCGCCGGGCUGcUguGuccGUGCg -3'
miRNA:   3'- cCGUGaAGCGGUUCGACaAguC---CAUG- -5'
25660 3' -51.6 NC_005337.1 + 8371 0.66 0.976792
Target:  5'- cGGCACgagcucccaaUgGCCAGGCUGUgCAGcaccguguuGUGCa -3'
miRNA:   3'- -CCGUGa---------AgCGGUUCGACAaGUC---------CAUG- -5'
25660 3' -51.6 NC_005337.1 + 117032 0.66 0.983546
Target:  5'- gGGCGCU--GCCGAcGCUG--CAGGUGg -3'
miRNA:   3'- -CCGUGAagCGGUU-CGACaaGUCCAUg -5'
25660 3' -51.6 NC_005337.1 + 2354 0.71 0.819665
Target:  5'- cGGCGCacgauccgCGCCAGGUgcucuaUCGGGUGCg -3'
miRNA:   3'- -CCGUGaa------GCGGUUCGaca---AGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 115340 0.71 0.828575
Target:  5'- cGGauguccCGCCu-GCUGUUCGGGUACg -3'
miRNA:   3'- -CCgugaa-GCGGuuCGACAAGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 115596 0.7 0.862169
Target:  5'- uGUAC-UCGCUgcccGGGCUGcgCGGGUACg -3'
miRNA:   3'- cCGUGaAGCGG----UUCGACaaGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 54421 0.7 0.894909
Target:  5'- gGGCAUg--GgCAAGCUGUgcuacgugcccuacaUCGGGUACa -3'
miRNA:   3'- -CCGUGaagCgGUUCGACA---------------AGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 58976 0.69 0.92394
Target:  5'- cGGCAgUUcaCGC--AGCUGUUCcGGGUGCu -3'
miRNA:   3'- -CCGUgAA--GCGguUCGACAAG-UCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 109721 0.67 0.964883
Target:  5'- uGGCGCcggaaCGCCGAGCag-UCGgcGGUGCg -3'
miRNA:   3'- -CCGUGaa---GCGGUUCGacaAGU--CCAUG- -5'
25660 3' -51.6 NC_005337.1 + 39550 0.68 0.944692
Target:  5'- cGGCGCccCGgCGGGCgc-UCGGGUACu -3'
miRNA:   3'- -CCGUGaaGCgGUUCGacaAGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 12635 0.69 0.918097
Target:  5'- gGGuCGCcgcgUCGUCGAuGCcgugggUGUUCAGGUACg -3'
miRNA:   3'- -CC-GUGa---AGCGGUU-CG------ACAAGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 109390 0.78 0.481328
Target:  5'- aGGCuaugucaacacuguuCUUCGagAAGCUGUUCGGGUGCa -3'
miRNA:   3'- -CCGu--------------GAAGCggUUCGACAAGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 113139 0.67 0.957549
Target:  5'- cGCGCUgCGgUAcguGCUGUUCGcGGUGCg -3'
miRNA:   3'- cCGUGAaGCgGUu--CGACAAGU-CCAUG- -5'
25660 3' -51.6 NC_005337.1 + 88485 0.74 0.673456
Target:  5'- cGCGCU-CGCCAAGCUGUcugccgUCAuggacagcgccgcgcGGUACg -3'
miRNA:   3'- cCGUGAaGCGGUUCGACA------AGU---------------CCAUG- -5'
25660 3' -51.6 NC_005337.1 + 105599 0.69 0.905627
Target:  5'- cGGgACUUCGCCGAGg---UCGGGgccgGCg -3'
miRNA:   3'- -CCgUGAAGCGGUUCgacaAGUCCa---UG- -5'
25660 3' -51.6 NC_005337.1 + 84107 0.67 0.961337
Target:  5'- gGGCGCggUCGCCGucuguuucgAGUcGUUCGGGa-- -3'
miRNA:   3'- -CCGUGa-AGCGGU---------UCGaCAAGUCCaug -5'
25660 3' -51.6 NC_005337.1 + 84997 0.66 0.974143
Target:  5'- gGGCGCgUUCGCCGAuGCcGUUCAcGcGCu -3'
miRNA:   3'- -CCGUG-AAGCGGUU-CGaCAAGUcCaUG- -5'
25660 3' -51.6 NC_005337.1 + 131984 0.72 0.791851
Target:  5'- aGCugUUCGCCAAGCUccuGUUCGGc--- -3'
miRNA:   3'- cCGugAAGCGGUUCGA---CAAGUCcaug -5'
25660 3' -51.6 NC_005337.1 + 38822 0.7 0.862169
Target:  5'- gGGCGCUaCGCCGcGCUGgaCGcGUACg -3'
miRNA:   3'- -CCGUGAaGCGGUuCGACaaGUcCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.