miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 3' -51.6 NC_005337.1 + 113139 0.67 0.957549
Target:  5'- cGCGCUgCGgUAcguGCUGUUCGcGGUGCg -3'
miRNA:   3'- cCGUGAaGCgGUu--CGACAAGU-CCAUG- -5'
25660 3' -51.6 NC_005337.1 + 45633 0.67 0.957157
Target:  5'- uGCAgUUCGCCAgcAGCuucaugaUGUggAGGUACu -3'
miRNA:   3'- cCGUgAAGCGGU--UCG-------ACAagUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 23782 0.68 0.953515
Target:  5'- aGCGCcaCGUCGAGCUGgcCcGGUACc -3'
miRNA:   3'- cCGUGaaGCGGUUCGACaaGuCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 129885 0.68 0.944692
Target:  5'- cGGCAUcUCGCCGcugcacauGGCggc-CGGGUACa -3'
miRNA:   3'- -CCGUGaAGCGGU--------UCGacaaGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 78321 0.68 0.944692
Target:  5'- uGGC-CcgCGCCAAGCUG--CAGGUcCa -3'
miRNA:   3'- -CCGuGaaGCGGUUCGACaaGUCCAuG- -5'
25660 3' -51.6 NC_005337.1 + 115273 0.68 0.944692
Target:  5'- cGCGCUcuggcgaacgcgUCGUCGagcAGCUGUUCAucgacggacgguGGUACa -3'
miRNA:   3'- cCGUGA------------AGCGGU---UCGACAAGU------------CCAUG- -5'
25660 3' -51.6 NC_005337.1 + 10384 0.68 0.944692
Target:  5'- cGGCcacgcaGCUggUGCuCGGGCUGUggAGGUGCg -3'
miRNA:   3'- -CCG------UGAa-GCG-GUUCGACAagUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 39550 0.68 0.944692
Target:  5'- cGGCGCccCGgCGGGCgc-UCGGGUACu -3'
miRNA:   3'- -CCGUGaaGCgGUUCGacaAGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 2284 0.68 0.939896
Target:  5'- cGCACUggGUCAGGCUGcggcggggUCGGGaGCg -3'
miRNA:   3'- cCGUGAagCGGUUCGACa-------AGUCCaUG- -5'
25660 3' -51.6 NC_005337.1 + 58976 0.69 0.92394
Target:  5'- cGGCAgUUcaCGC--AGCUGUUCcGGGUGCu -3'
miRNA:   3'- -CCGUgAA--GCGguUCGACAAG-UCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 38486 0.69 0.92394
Target:  5'- gGGCGCgcgcgUCGCCGAGCUGgcCGacgACg -3'
miRNA:   3'- -CCGUGa----AGCGGUUCGACaaGUccaUG- -5'
25660 3' -51.6 NC_005337.1 + 127586 0.69 0.918097
Target:  5'- gGGCGCagccguggacgUCGCCGAGUcGUgcugUGGGUGCa -3'
miRNA:   3'- -CCGUGa----------AGCGGUUCGaCAa---GUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 12635 0.69 0.918097
Target:  5'- gGGuCGCcgcgUCGUCGAuGCcgugggUGUUCAGGUACg -3'
miRNA:   3'- -CC-GUGa---AGCGGUU-CG------ACAAGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 105599 0.69 0.905627
Target:  5'- cGGgACUUCGCCGAGg---UCGGGgccgGCg -3'
miRNA:   3'- -CCgUGAAGCGGUUCgacaAGUCCa---UG- -5'
25660 3' -51.6 NC_005337.1 + 53919 0.69 0.899005
Target:  5'- cGGCGCgaaCGCgu-GCUgGUUCAGGUAUc -3'
miRNA:   3'- -CCGUGaa-GCGguuCGA-CAAGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 54421 0.7 0.894909
Target:  5'- gGGCAUg--GgCAAGCUGUgcuacgugcccuacaUCGGGUACa -3'
miRNA:   3'- -CCGUGaagCgGUUCGACA---------------AGUCCAUG- -5'
25660 3' -51.6 NC_005337.1 + 60887 0.7 0.892128
Target:  5'- cGGCGUUUCGUCGGGCgUGUgugCGGGcACg -3'
miRNA:   3'- -CCGUGAAGCGGUUCG-ACAa--GUCCaUG- -5'
25660 3' -51.6 NC_005337.1 + 96762 0.7 0.885001
Target:  5'- gGGgAgUUCGCCGAGgUGUUCccgGGGUcgGCg -3'
miRNA:   3'- -CCgUgAAGCGGUUCgACAAG---UCCA--UG- -5'
25660 3' -51.6 NC_005337.1 + 97232 0.7 0.877629
Target:  5'- cGGCACUUCGCCAacgacgAGUUcugUCGGGc-- -3'
miRNA:   3'- -CCGUGAAGCGGU------UCGAca-AGUCCaug -5'
25660 3' -51.6 NC_005337.1 + 44461 0.7 0.862169
Target:  5'- aGCGCcUCGCCGAGCUggaggccaGUUCgAGGcGCg -3'
miRNA:   3'- cCGUGaAGCGGUUCGA--------CAAG-UCCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.