Results 41 - 60 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 67464 | 0.66 | 0.883947 |
Target: 5'- cGGCGCaGCCGc--CGCUUCGUcGAGGGc -3' miRNA: 3'- cCUGCG-CGGCcucGCGAAGCA-CUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 15707 | 0.66 | 0.890759 |
Target: 5'- cGACGUGCCGGAcgucGUGCgagcgCGcGAGGu -3' miRNA: 3'- cCUGCGCGGCCU----CGCGaa---GCaCUUCu -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 28500 | 0.66 | 0.890759 |
Target: 5'- cGGCGCGCgGucGCGCggcacugCGUGggGc -3' miRNA: 3'- cCUGCGCGgCcuCGCGaa-----GCACuuCu -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 50385 | 0.66 | 0.890759 |
Target: 5'- cGGGCgccugGCGCgGGGGCGCgccgcgcgUCgGUGAcGGAg -3' miRNA: 3'- -CCUG-----CGCGgCCUCGCGa-------AG-CACU-UCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 54097 | 0.67 | 0.854533 |
Target: 5'- uGGACgGCGUguaCGG-GCGCUgcuaCGUGGAGc -3' miRNA: 3'- -CCUG-CGCG---GCCuCGCGAa---GCACUUCu -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 77415 | 0.67 | 0.854533 |
Target: 5'- uGGAUGUGCgGGcccAGCGaggcccgCGUGGAGGg -3' miRNA: 3'- -CCUGCGCGgCC---UCGCgaa----GCACUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 13652 | 0.67 | 0.83036 |
Target: 5'- aGGACGCGCgGGAuGgGCa---UGAAGAa -3' miRNA: 3'- -CCUGCGCGgCCU-CgCGaagcACUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 56085 | 0.67 | 0.813338 |
Target: 5'- uGAC-CGa-GGAGCGCgaCGUGGAGAa -3' miRNA: 3'- cCUGcGCggCCUCGCGaaGCACUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 7867 | 0.67 | 0.821935 |
Target: 5'- -cGCGCGCCGG-GCGgcCUUggccgugaucacCGUGAAGGg -3' miRNA: 3'- ccUGCGCGGCCuCGC--GAA------------GCACUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 80084 | 0.67 | 0.838606 |
Target: 5'- cGGACGaCGuCCGGuGCGCgugCcUGAAGc -3' miRNA: 3'- -CCUGC-GC-GGCCuCGCGaa-GcACUUCu -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 14282 | 0.67 | 0.854533 |
Target: 5'- uGGuCGUGa-GGAGCGaCUUCGUGucauGGAu -3' miRNA: 3'- -CCuGCGCggCCUCGC-GAAGCACu---UCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 95340 | 0.67 | 0.821935 |
Target: 5'- -aGCGCGCCGuGGCGCUgCGacaccGggGAg -3' miRNA: 3'- ccUGCGCGGCcUCGCGAaGCa----CuuCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 97044 | 0.67 | 0.821935 |
Target: 5'- uGGACGUGCUcauGCGCUucuUCGUGGAc- -3' miRNA: 3'- -CCUGCGCGGccuCGCGA---AGCACUUcu -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 71319 | 0.67 | 0.83036 |
Target: 5'- uGGACGcCGCUGGAGCacuuguucauGCUgagUCGccacGAAGAc -3' miRNA: 3'- -CCUGC-GCGGCCUCG----------CGA---AGCa---CUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 80189 | 0.67 | 0.838606 |
Target: 5'- cGGACGCgcuccuGCCGcGGGCGC----UGAAGAa -3' miRNA: 3'- -CCUGCG------CGGC-CUCGCGaagcACUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 66626 | 0.67 | 0.81247 |
Target: 5'- cGGugGUGCUGGAGCacgcgcgcgaccaGCUgcugucCGUGAuGGAc -3' miRNA: 3'- -CCugCGCGGCCUCG-------------CGAa-----GCACU-UCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 42129 | 0.67 | 0.838606 |
Target: 5'- aGGACgGCGCUGGcccgcGGCGCgucCGgggucugGAAGAg -3' miRNA: 3'- -CCUG-CGCGGCC-----UCGCGaa-GCa------CUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 132173 | 0.67 | 0.838606 |
Target: 5'- cGGACGCGaCGGAgGCGCUggCGcUGgcGu -3' miRNA: 3'- -CCUGCGCgGCCU-CGCGAa-GC-ACuuCu -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 18903 | 0.67 | 0.854533 |
Target: 5'- -cACGCGCUGGAGCGUcgCGggcuuGAg -3' miRNA: 3'- ccUGCGCGGCCUCGCGaaGCacuu-CU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 993 | 0.67 | 0.854533 |
Target: 5'- cGGCGCG-CGGAGgGCgggcgUCGccUGGAGGc -3' miRNA: 3'- cCUGCGCgGCCUCgCGa----AGC--ACUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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