miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 102999 0.71 0.62901
Target:  5'- cGGACGUGCCcGAGCGCggcccgcagGUGggGc -3'
miRNA:   3'- -CCUGCGCGGcCUCGCGaag------CACuuCu -5'
25660 5' -56.5 NC_005337.1 + 69247 0.71 0.62901
Target:  5'- uGGACGUGCCGGuGaCGCUg-GUGguGGg -3'
miRNA:   3'- -CCUGCGCGGCCuC-GCGAagCACuuCU- -5'
25660 5' -56.5 NC_005337.1 + 88336 0.71 0.608644
Target:  5'- -cGCGCGCCGGcGCGCg-CGaGAAGAc -3'
miRNA:   3'- ccUGCGCGGCCuCGCGaaGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 88442 0.71 0.608644
Target:  5'- cGGACGCGCCGGu-CGCggaacacgcCGUcGAGGAg -3'
miRNA:   3'- -CCUGCGCGGCCucGCGaa-------GCA-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 38475 0.7 0.699938
Target:  5'- cGGuGCGCGCCGGGcGCGCgcgUCGccGAGc -3'
miRNA:   3'- -CC-UGCGCGGCCU-CGCGa--AGCacUUCu -5'
25660 5' -56.5 NC_005337.1 + 99460 0.7 0.648367
Target:  5'- uGGACGCGCgCGugcgcgaGGGCGuCUUCGUGGc-- -3'
miRNA:   3'- -CCUGCGCG-GC-------CUCGC-GAAGCACUucu -5'
25660 5' -56.5 NC_005337.1 + 32684 0.7 0.659557
Target:  5'- aGAgGCGUCGGAGCGCguagUCcaUGAAGu -3'
miRNA:   3'- cCUgCGCGGCCUCGCGa---AGc-ACUUCu -5'
25660 5' -56.5 NC_005337.1 + 20796 0.7 0.66565
Target:  5'- cGGGCGUGCCGGAGCuggacagGAAGGu -3'
miRNA:   3'- -CCUGCGCGGCCUCGcgaagcaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 43838 0.7 0.679826
Target:  5'- -aGCGgGCCGGcGGCGCg--GUGGAGAu -3'
miRNA:   3'- ccUGCgCGGCC-UCGCGaagCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 110365 0.7 0.679826
Target:  5'- cGGGCGCGCgGGcGCGCggcagCGacaggcgGAGGAg -3'
miRNA:   3'- -CCUGCGCGgCCuCGCGaa---GCa------CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 108996 0.7 0.695932
Target:  5'- cGGACGCugGCCgaGGAGgGCUcgcggaacgugggCGUGGAGAu -3'
miRNA:   3'- -CCUGCG--CGG--CCUCgCGAa------------GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 56303 0.7 0.679826
Target:  5'- cGGcCGCuGCUcgagaucucgcaGGAGCGCUUCGUGGu-- -3'
miRNA:   3'- -CCuGCG-CGG------------CCUCGCGAAGCACUucu -5'
25660 5' -56.5 NC_005337.1 + 21809 0.7 0.699938
Target:  5'- cGACGCGCCGcAGCuCUUCGUGc--- -3'
miRNA:   3'- cCUGCGCGGCcUCGcGAAGCACuucu -5'
25660 5' -56.5 NC_005337.1 + 98486 0.7 0.669706
Target:  5'- gGGGCGCGCCGGcGGCGUccgUCaUGAc-- -3'
miRNA:   3'- -CCUGCGCGGCC-UCGCGa--AGcACUucu -5'
25660 5' -56.5 NC_005337.1 + 88100 0.69 0.719825
Target:  5'- uGGugGaCGCCguGGAGCGggUCGUcuuccgGAAGAa -3'
miRNA:   3'- -CCugC-GCGG--CCUCGCgaAGCA------CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 52120 0.69 0.709915
Target:  5'- cGACGgGCCGGccauGGC-CUUCGUGGAc- -3'
miRNA:   3'- cCUGCgCGGCC----UCGcGAAGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 57595 0.69 0.709915
Target:  5'- -cACGCuGCUGcuGCGCUUCGUGGAGc -3'
miRNA:   3'- ccUGCG-CGGCcuCGCGAAGCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 95773 0.69 0.719825
Target:  5'- aGGCGCGCCcGGGCGgccaccucCUUCGaGAGGAa -3'
miRNA:   3'- cCUGCGCGGcCUCGC--------GAAGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 99846 0.69 0.758632
Target:  5'- cGGACGauggcgaGgUGGAGCGCUUCGagcUGAGcGAc -3'
miRNA:   3'- -CCUGCg------CgGCCUCGCGAAGC---ACUU-CU- -5'
25660 5' -56.5 NC_005337.1 + 10329 0.69 0.739414
Target:  5'- -aGCGCGaCCGGcuCGCggggCGUGggGAa -3'
miRNA:   3'- ccUGCGC-GGCCucGCGaa--GCACuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.