miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 92968 0.69 0.758632
Target:  5'- uGGACGCcacGCUGGAcaacGCGCUggcCGUGAuGGc -3'
miRNA:   3'- -CCUGCG---CGGCCU----CGCGAa--GCACUuCU- -5'
25660 5' -56.5 NC_005337.1 + 52120 0.69 0.709915
Target:  5'- cGACGgGCCGGccauGGC-CUUCGUGGAc- -3'
miRNA:   3'- cCUGCgCGGCC----UCGcGAAGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 90445 0.68 0.768079
Target:  5'- -cGCGcCGCCGGccCGCUgcagCGUGGAGGu -3'
miRNA:   3'- ccUGC-GCGGCCucGCGAa---GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 37116 0.68 0.786605
Target:  5'- ---aGCGCCGaGGCGCcgUCGUaGGAGAc -3'
miRNA:   3'- ccugCGCGGCcUCGCGa-AGCA-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 37906 0.68 0.777407
Target:  5'- cGGGCGCGaCCGGgucgauAGCccccGCUUCGcGAAGu -3'
miRNA:   3'- -CCUGCGC-GGCC------UCG----CGAAGCaCUUCu -5'
25660 5' -56.5 NC_005337.1 + 80587 0.68 0.786605
Target:  5'- aGGACGCGCCcG-GCGCUUC---AAGGg -3'
miRNA:   3'- -CCUGCGCGGcCuCGCGAAGcacUUCU- -5'
25660 5' -56.5 NC_005337.1 + 131180 0.68 0.786605
Target:  5'- uGAUGCGCgCGGAggagggccaGCGCcccucCGUGGAGAu -3'
miRNA:   3'- cCUGCGCG-GCCU---------CGCGaa---GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 10440 0.68 0.795665
Target:  5'- -uGCGCGgCGGuGCGCgcgUCGUGcgccAGGAc -3'
miRNA:   3'- ccUGCGCgGCCuCGCGa--AGCAC----UUCU- -5'
25660 5' -56.5 NC_005337.1 + 91853 0.68 0.768079
Target:  5'- cGAUGUccgucaGCUuGAGcCGCUUCGUGAGGAu -3'
miRNA:   3'- cCUGCG------CGGcCUC-GCGAAGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 58306 0.68 0.803695
Target:  5'- aGGACGUGCCGGAcaaguccGUGCUcUCGaagcAGGAg -3'
miRNA:   3'- -CCUGCGCGGCCU-------CGCGA-AGCac--UUCU- -5'
25660 5' -56.5 NC_005337.1 + 90504 0.67 0.83036
Target:  5'- aGGAUGCGCgagaCGGuGUGCUUgGUcacGGAGGg -3'
miRNA:   3'- -CCUGCGCG----GCCuCGCGAAgCA---CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 77415 0.67 0.854533
Target:  5'- uGGAUGUGCgGGcccAGCGaggcccgCGUGGAGGg -3'
miRNA:   3'- -CCUGCGCGgCC---UCGCgaa----GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 993 0.67 0.854533
Target:  5'- cGGCGCG-CGGAGgGCgggcgUCGccUGGAGGc -3'
miRNA:   3'- cCUGCGCgGCCUCgCGa----AGC--ACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 18903 0.67 0.854533
Target:  5'- -cACGCGCUGGAGCGUcgCGggcuuGAg -3'
miRNA:   3'- ccUGCGCGGCCUCGCGaaGCacuu-CU- -5'
25660 5' -56.5 NC_005337.1 + 132173 0.67 0.838606
Target:  5'- cGGACGCGaCGGAgGCGCUggCGcUGgcGu -3'
miRNA:   3'- -CCUGCGCgGCCU-CGCGAa-GC-ACuuCu -5'
25660 5' -56.5 NC_005337.1 + 71287 0.67 0.813338
Target:  5'- cGugGCGCUGGuGCGCUUCc------ -3'
miRNA:   3'- cCugCGCGGCCuCGCGAAGcacuucu -5'
25660 5' -56.5 NC_005337.1 + 66626 0.67 0.81247
Target:  5'- cGGugGUGCUGGAGCacgcgcgcgaccaGCUgcugucCGUGAuGGAc -3'
miRNA:   3'- -CCugCGCGGCCUCG-------------CGAa-----GCACU-UCU- -5'
25660 5' -56.5 NC_005337.1 + 42129 0.67 0.838606
Target:  5'- aGGACgGCGCUGGcccgcGGCGCgucCGgggucugGAAGAg -3'
miRNA:   3'- -CCUG-CGCGGCC-----UCGCGaa-GCa------CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 47525 0.67 0.83036
Target:  5'- uGGccauCGUGCCGGAGCGggaccUCGUGGGc- -3'
miRNA:   3'- -CCu---GCGCGGCCUCGCga---AGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 105694 0.67 0.821935
Target:  5'- cGGugGCGCUGGucgcAGCGCccgUCGUa---- -3'
miRNA:   3'- -CCugCGCGGCC----UCGCGa--AGCAcuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.