miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 56085 0.67 0.813338
Target:  5'- uGAC-CGa-GGAGCGCgaCGUGGAGAa -3'
miRNA:   3'- cCUGcGCggCCUCGCGaaGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 7867 0.67 0.821935
Target:  5'- -cGCGCGCCGG-GCGgcCUUggccgugaucacCGUGAAGGg -3'
miRNA:   3'- ccUGCGCGGCCuCGC--GAA------------GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 95340 0.67 0.821935
Target:  5'- -aGCGCGCCGuGGCGCUgCGacaccGggGAg -3'
miRNA:   3'- ccUGCGCGGCcUCGCGAaGCa----CuuCU- -5'
25660 5' -56.5 NC_005337.1 + 97044 0.67 0.821935
Target:  5'- uGGACGUGCUcauGCGCUucuUCGUGGAc- -3'
miRNA:   3'- -CCUGCGCGGccuCGCGA---AGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 120460 0.67 0.821935
Target:  5'- gGGGCGCGCUcGAGCGCg-CGcUGGAu- -3'
miRNA:   3'- -CCUGCGCGGcCUCGCGaaGC-ACUUcu -5'
25660 5' -56.5 NC_005337.1 + 13652 0.67 0.83036
Target:  5'- aGGACGCGCgGGAuGgGCa---UGAAGAa -3'
miRNA:   3'- -CCUGCGCGgCCU-CgCGaagcACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 71319 0.67 0.83036
Target:  5'- uGGACGcCGCUGGAGCacuuguucauGCUgagUCGccacGAAGAc -3'
miRNA:   3'- -CCUGC-GCGGCCUCG----------CGA---AGCa---CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 116763 0.67 0.83779
Target:  5'- aGGACaccuGCGCCGGAacaacaaGCGCUgCGUGu--- -3'
miRNA:   3'- -CCUG----CGCGGCCU-------CGCGAaGCACuucu -5'
25660 5' -56.5 NC_005337.1 + 80189 0.67 0.838606
Target:  5'- cGGACGCgcuccuGCCGcGGGCGC----UGAAGAa -3'
miRNA:   3'- -CCUGCG------CGGC-CUCGCGaagcACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 80084 0.67 0.838606
Target:  5'- cGGACGaCGuCCGGuGCGCgugCcUGAAGc -3'
miRNA:   3'- -CCUGC-GC-GGCCuCGCGaa-GcACUUCu -5'
25660 5' -56.5 NC_005337.1 + 993 0.67 0.854533
Target:  5'- cGGCGCG-CGGAGgGCgggcgUCGccUGGAGGc -3'
miRNA:   3'- cCUGCGCgGCCUCgCGa----AGC--ACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 14282 0.67 0.854533
Target:  5'- uGGuCGUGa-GGAGCGaCUUCGUGucauGGAu -3'
miRNA:   3'- -CCuGCGCggCCUCGC-GAAGCACu---UCU- -5'
25660 5' -56.5 NC_005337.1 + 54097 0.67 0.854533
Target:  5'- uGGACgGCGUguaCGG-GCGCUgcuaCGUGGAGc -3'
miRNA:   3'- -CCUG-CGCG---GCCuCGCGAa---GCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 71287 0.67 0.813338
Target:  5'- cGugGCGCUGGuGCGCUUCc------ -3'
miRNA:   3'- cCugCGCGGCCuCGCGAAGcacuucu -5'
25660 5' -56.5 NC_005337.1 + 101252 0.66 0.897346
Target:  5'- --uCGCGCUGGAcgGCGCggaCGcGAAGAu -3'
miRNA:   3'- ccuGCGCGGCCU--CGCGaa-GCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 56218 0.66 0.897346
Target:  5'- aGGACGUGgCGGAgggGCGgaUCGUGc--- -3'
miRNA:   3'- -CCUGCGCgGCCU---CGCgaAGCACuucu -5'
25660 5' -56.5 NC_005337.1 + 66095 0.66 0.890759
Target:  5'- cGGAgGCGCugugCGGcgucuGCGCgcgCGUGGAGu -3'
miRNA:   3'- -CCUgCGCG----GCCu----CGCGaa-GCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 123615 0.66 0.890759
Target:  5'- --cCGCGCuCGcGGGUGCUgacgcUCGUGGAGc -3'
miRNA:   3'- ccuGCGCG-GC-CUCGCGA-----AGCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 50385 0.66 0.890759
Target:  5'- cGGGCgccugGCGCgGGGGCGCgccgcgcgUCgGUGAcGGAg -3'
miRNA:   3'- -CCUG-----CGCGgCCUCGCGa-------AG-CACU-UCU- -5'
25660 5' -56.5 NC_005337.1 + 80039 0.66 0.897346
Target:  5'- cGGACGCGCCGGA-CGa-----GGAGAu -3'
miRNA:   3'- -CCUGCGCGGCCUcGCgaagcaCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.