miRNA display CGI


Results 41 - 60 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 92968 0.69 0.758632
Target:  5'- uGGACGCcacGCUGGAcaacGCGCUggcCGUGAuGGc -3'
miRNA:   3'- -CCUGCG---CGGCCU----CGCGAa--GCACUuCU- -5'
25660 5' -56.5 NC_005337.1 + 99846 0.69 0.758632
Target:  5'- cGGACGauggcgaGgUGGAGCGCUUCGagcUGAGcGAc -3'
miRNA:   3'- -CCUGCg------CgGCCUCGCGAAGC---ACUU-CU- -5'
25660 5' -56.5 NC_005337.1 + 90445 0.68 0.768079
Target:  5'- -cGCGcCGCCGGccCGCUgcagCGUGGAGGu -3'
miRNA:   3'- ccUGC-GCGGCCucGCGAa---GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 91853 0.68 0.768079
Target:  5'- cGAUGUccgucaGCUuGAGcCGCUUCGUGAGGAu -3'
miRNA:   3'- cCUGCG------CGGcCUC-GCGAAGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 37906 0.68 0.777407
Target:  5'- cGGGCGCGaCCGGgucgauAGCccccGCUUCGcGAAGu -3'
miRNA:   3'- -CCUGCGC-GGCC------UCG----CGAAGCaCUUCu -5'
25660 5' -56.5 NC_005337.1 + 131180 0.68 0.786605
Target:  5'- uGAUGCGCgCGGAggagggccaGCGCcccucCGUGGAGAu -3'
miRNA:   3'- cCUGCGCG-GCCU---------CGCGaa---GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 80587 0.68 0.786605
Target:  5'- aGGACGCGCCcG-GCGCUUC---AAGGg -3'
miRNA:   3'- -CCUGCGCGGcCuCGCGAAGcacUUCU- -5'
25660 5' -56.5 NC_005337.1 + 37116 0.68 0.786605
Target:  5'- ---aGCGCCGaGGCGCcgUCGUaGGAGAc -3'
miRNA:   3'- ccugCGCGGCcUCGCGa-AGCA-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 10440 0.68 0.795665
Target:  5'- -uGCGCGgCGGuGCGCgcgUCGUGcgccAGGAc -3'
miRNA:   3'- ccUGCGCgGCCuCGCGa--AGCAC----UUCU- -5'
25660 5' -56.5 NC_005337.1 + 58306 0.68 0.803695
Target:  5'- aGGACGUGCCGGAcaaguccGUGCUcUCGaagcAGGAg -3'
miRNA:   3'- -CCUGCGCGGCCU-------CGCGA-AGCac--UUCU- -5'
25660 5' -56.5 NC_005337.1 + 66626 0.67 0.81247
Target:  5'- cGGugGUGCUGGAGCacgcgcgcgaccaGCUgcugucCGUGAuGGAc -3'
miRNA:   3'- -CCugCGCGGCCUCG-------------CGAa-----GCACU-UCU- -5'
25660 5' -56.5 NC_005337.1 + 56085 0.67 0.813338
Target:  5'- uGAC-CGa-GGAGCGCgaCGUGGAGAa -3'
miRNA:   3'- cCUGcGCggCCUCGCGaaGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 71287 0.67 0.813338
Target:  5'- cGugGCGCUGGuGCGCUUCc------ -3'
miRNA:   3'- cCugCGCGGCCuCGCGAAGcacuucu -5'
25660 5' -56.5 NC_005337.1 + 66774 0.67 0.821935
Target:  5'- cGGGC-CGCUGGGcGUGCUcuccaacuaCGUGAAGAc -3'
miRNA:   3'- -CCUGcGCGGCCU-CGCGAa--------GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 97044 0.67 0.821935
Target:  5'- uGGACGUGCUcauGCGCUucuUCGUGGAc- -3'
miRNA:   3'- -CCUGCGCGGccuCGCGA---AGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 95340 0.67 0.821935
Target:  5'- -aGCGCGCCGuGGCGCUgCGacaccGggGAg -3'
miRNA:   3'- ccUGCGCGGCcUCGCGAaGCa----CuuCU- -5'
25660 5' -56.5 NC_005337.1 + 105694 0.67 0.821935
Target:  5'- cGGugGCGCUGGucgcAGCGCccgUCGUa---- -3'
miRNA:   3'- -CCugCGCGGCC----UCGCGa--AGCAcuucu -5'
25660 5' -56.5 NC_005337.1 + 7867 0.67 0.821935
Target:  5'- -cGCGCGCCGG-GCGgcCUUggccgugaucacCGUGAAGGg -3'
miRNA:   3'- ccUGCGCGGCCuCGC--GAA------------GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 120460 0.67 0.821935
Target:  5'- gGGGCGCGCUcGAGCGCg-CGcUGGAu- -3'
miRNA:   3'- -CCUGCGCGGcCUCGCGaaGC-ACUUcu -5'
25660 5' -56.5 NC_005337.1 + 90504 0.67 0.83036
Target:  5'- aGGAUGCGCgagaCGGuGUGCUUgGUcacGGAGGg -3'
miRNA:   3'- -CCUGCGCG----GCCuCGCGAAgCA---CUUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.