miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 47525 0.67 0.83036
Target:  5'- uGGccauCGUGCCGGAGCGggaccUCGUGGGc- -3'
miRNA:   3'- -CCu---GCGCGGCCUCGCga---AGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 13652 0.67 0.83036
Target:  5'- aGGACGCGCgGGAuGgGCa---UGAAGAa -3'
miRNA:   3'- -CCUGCGCGgCCU-CgCGaagcACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 71319 0.67 0.83036
Target:  5'- uGGACGcCGCUGGAGCacuuguucauGCUgagUCGccacGAAGAc -3'
miRNA:   3'- -CCUGC-GCGGCCUCG----------CGA---AGCa---CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 116763 0.67 0.83779
Target:  5'- aGGACaccuGCGCCGGAacaacaaGCGCUgCGUGu--- -3'
miRNA:   3'- -CCUG----CGCGGCCU-------CGCGAaGCACuucu -5'
25660 5' -56.5 NC_005337.1 + 80084 0.67 0.838606
Target:  5'- cGGACGaCGuCCGGuGCGCgugCcUGAAGc -3'
miRNA:   3'- -CCUGC-GC-GGCCuCGCGaa-GcACUUCu -5'
25660 5' -56.5 NC_005337.1 + 80189 0.67 0.838606
Target:  5'- cGGACGCgcuccuGCCGcGGGCGC----UGAAGAa -3'
miRNA:   3'- -CCUGCG------CGGC-CUCGCGaagcACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 132173 0.67 0.838606
Target:  5'- cGGACGCGaCGGAgGCGCUggCGcUGgcGu -3'
miRNA:   3'- -CCUGCGCgGCCU-CGCGAa-GC-ACuuCu -5'
25660 5' -56.5 NC_005337.1 + 42129 0.67 0.838606
Target:  5'- aGGACgGCGCUGGcccgcGGCGCgucCGgggucugGAAGAg -3'
miRNA:   3'- -CCUG-CGCGGCC-----UCGCGaa-GCa------CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 14282 0.67 0.854533
Target:  5'- uGGuCGUGa-GGAGCGaCUUCGUGucauGGAu -3'
miRNA:   3'- -CCuGCGCggCCUCGC-GAAGCACu---UCU- -5'
25660 5' -56.5 NC_005337.1 + 993 0.67 0.854533
Target:  5'- cGGCGCG-CGGAGgGCgggcgUCGccUGGAGGc -3'
miRNA:   3'- cCUGCGCgGCCUCgCGa----AGC--ACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 77415 0.67 0.854533
Target:  5'- uGGAUGUGCgGGcccAGCGaggcccgCGUGGAGGg -3'
miRNA:   3'- -CCUGCGCGgCC---UCGCgaa----GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 18903 0.67 0.854533
Target:  5'- -cACGCGCUGGAGCGUcgCGggcuuGAg -3'
miRNA:   3'- ccUGCGCGGCCUCGCGaaGCacuu-CU- -5'
25660 5' -56.5 NC_005337.1 + 54097 0.67 0.854533
Target:  5'- uGGACgGCGUguaCGG-GCGCUgcuaCGUGGAGc -3'
miRNA:   3'- -CCUG-CGCG---GCCuCGCGAa---GCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 993 0.67 0.854533
Target:  5'- cGGCGCG-CGGAGgGCgggcgUCGccUGGAGGc -3'
miRNA:   3'- cCUGCGCgGCCUCgCGa----AGC--ACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 133742 0.66 0.861443
Target:  5'- aGugGCGCCggcagcuGGAGCGCcugCGccgcGAGGAg -3'
miRNA:   3'- cCugCGCGG-------CCUCGCGaa-GCa---CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 133742 0.66 0.861443
Target:  5'- aGugGCGCCggcagcuGGAGCGCcugCGccgcGAGGAg -3'
miRNA:   3'- cCugCGCGG-------CCUCGCGaa-GCa---CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 64808 0.66 0.862201
Target:  5'- cGGcACGaCGCCGGAacacccagGCGCUUgagGAGGAa -3'
miRNA:   3'- -CC-UGC-GCGGCCU--------CGCGAAgcaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 35760 0.66 0.862201
Target:  5'- uGGGCGCGaCCGGgaucguGGCGCgugUCaUGAcGGAc -3'
miRNA:   3'- -CCUGCGC-GGCC------UCGCGa--AGcACU-UCU- -5'
25660 5' -56.5 NC_005337.1 + 74586 0.66 0.862201
Target:  5'- cGGACGCGCUGucGCGCaUCGg----- -3'
miRNA:   3'- -CCUGCGCGGCcuCGCGaAGCacuucu -5'
25660 5' -56.5 NC_005337.1 + 29149 0.66 0.862201
Target:  5'- cGACGgcCGuCCGGAGCGCcgcgUCGUccagcuccGGAGAc -3'
miRNA:   3'- cCUGC--GC-GGCCUCGCGa---AGCA--------CUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.