miRNA display CGI


Results 81 - 100 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 2204 0.66 0.865958
Target:  5'- cGGACGCgggcgcggcccggGCCGcGAGCGCgcgcaggaaccgCGcGAGGAa -3'
miRNA:   3'- -CCUGCG-------------CGGC-CUCGCGaa----------GCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 39278 0.66 0.867446
Target:  5'- uGGcCGCGCUGGcGGCGgcggugauauuuuaCUUCGUGgcGGu -3'
miRNA:   3'- -CCuGCGCGGCC-UCGC--------------GAAGCACuuCU- -5'
25660 5' -56.5 NC_005337.1 + 73399 0.66 0.869663
Target:  5'- cGACGaaaCGCCGGAcGCGCggUCGgaguuccaGGAGAu -3'
miRNA:   3'- cCUGC---GCGGCCU-CGCGa-AGCa-------CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 88968 0.66 0.869663
Target:  5'- aGGGCGCGgucCCGGuGUGCgaccuggCGcgGGAGAa -3'
miRNA:   3'- -CCUGCGC---GGCCuCGCGaa-----GCa-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 13353 0.66 0.869663
Target:  5'- gGGcACGCGCCGGGacaCGCggCGUucAGAc -3'
miRNA:   3'- -CC-UGCGCGGCCUc--GCGaaGCAcuUCU- -5'
25660 5' -56.5 NC_005337.1 + 121817 0.66 0.876913
Target:  5'- uGGACGaguucgguaugaCGCCGGccgacGUGC-UCGUGAAGu -3'
miRNA:   3'- -CCUGC------------GCGGCCu----CGCGaAGCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 122290 0.66 0.876913
Target:  5'- gGGACGCGgaGGAGCuccgcgagGCgggCGUGAAc- -3'
miRNA:   3'- -CCUGCGCggCCUCG--------CGaa-GCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 97080 0.66 0.876913
Target:  5'- aGGCGCGCCGcGGGUGCauaaaccUGGAGGu -3'
miRNA:   3'- cCUGCGCGGC-CUCGCGaagc---ACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 23048 0.66 0.876913
Target:  5'- cGGAgGCGCCcuucaGGAugGCGCU-CGUGGGc- -3'
miRNA:   3'- -CCUgCGCGG-----CCU--CGCGAaGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 102315 0.66 0.876913
Target:  5'- -cAUGCGCCuGGGGCuCcgCGUGGAGGc -3'
miRNA:   3'- ccUGCGCGG-CCUCGcGaaGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 68244 0.66 0.876913
Target:  5'- cGGAgCGCgGCCGGcGCGUgggcgagCGUcGAGGAc -3'
miRNA:   3'- -CCU-GCG-CGGCCuCGCGaa-----GCA-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 38593 0.66 0.876913
Target:  5'- aGGCGUGgCGcGAGCGCagCGUGGGc- -3'
miRNA:   3'- cCUGCGCgGC-CUCGCGaaGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 129210 0.66 0.876913
Target:  5'- uGGACGCcCCaGAGCGCUgcuGUGGc-- -3'
miRNA:   3'- -CCUGCGcGGcCUCGCGAag-CACUucu -5'
25660 5' -56.5 NC_005337.1 + 55725 0.66 0.876913
Target:  5'- cGACGCGCaCGGcGCGCc-CGUGuacGGGu -3'
miRNA:   3'- cCUGCGCG-GCCuCGCGaaGCACu--UCU- -5'
25660 5' -56.5 NC_005337.1 + 58730 0.66 0.876913
Target:  5'- uGGGCGCGCCGGcgcgGGUGCacCG-GAGc- -3'
miRNA:   3'- -CCUGCGCGGCC----UCGCGaaGCaCUUcu -5'
25660 5' -56.5 NC_005337.1 + 38763 0.66 0.876913
Target:  5'- uGGCGaGCCGGuGCGCg--GUGGAGc -3'
miRNA:   3'- cCUGCgCGGCCuCGCGaagCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 2652 0.66 0.88186
Target:  5'- aGGugGCGCCGGccgccuccacgcugAGUGCgcgCGagcugucGAAGAu -3'
miRNA:   3'- -CCugCGCGGCC--------------UCGCGaa-GCa------CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 99601 0.66 0.883253
Target:  5'- gGGACuGCGCCGuGAGCaacgGCUacgUCGUGcgcgugcGGGAc -3'
miRNA:   3'- -CCUG-CGCGGC-CUCG----CGA---AGCAC-------UUCU- -5'
25660 5' -56.5 NC_005337.1 + 88030 0.66 0.883947
Target:  5'- aGGAUGUGCCGGcgcacGUGCacggggUCGUGcuGGAu -3'
miRNA:   3'- -CCUGCGCGGCCu----CGCGa-----AGCACu-UCU- -5'
25660 5' -56.5 NC_005337.1 + 67464 0.66 0.883947
Target:  5'- cGGCGCaGCCGc--CGCUUCGUcGAGGGc -3'
miRNA:   3'- cCUGCG-CGGCcucGCGAAGCA-CUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.