miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 31765 0.75 0.425481
Target:  5'- cGugGCGUCGGAGCuGCU-CGgGAGGAg -3'
miRNA:   3'- cCugCGCGGCCUCG-CGAaGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 32684 0.7 0.659557
Target:  5'- aGAgGCGUCGGAGCGCguagUCcaUGAAGu -3'
miRNA:   3'- cCUgCGCGGCCUCGCGa---AGc-ACUUCu -5'
25660 5' -56.5 NC_005337.1 + 35760 0.66 0.862201
Target:  5'- uGGGCGCGaCCGGgaucguGGCGCgugUCaUGAcGGAc -3'
miRNA:   3'- -CCUGCGC-GGCC------UCGCGa--AGcACU-UCU- -5'
25660 5' -56.5 NC_005337.1 + 37116 0.68 0.786605
Target:  5'- ---aGCGCCGaGGCGCcgUCGUaGGAGAc -3'
miRNA:   3'- ccugCGCGGCcUCGCGa-AGCA-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 37906 0.68 0.777407
Target:  5'- cGGGCGCGaCCGGgucgauAGCccccGCUUCGcGAAGu -3'
miRNA:   3'- -CCUGCGC-GGCC------UCG----CGAAGCaCUUCu -5'
25660 5' -56.5 NC_005337.1 + 38475 0.7 0.699938
Target:  5'- cGGuGCGCGCCGGGcGCGCgcgUCGccGAGc -3'
miRNA:   3'- -CC-UGCGCGGCCU-CGCGa--AGCacUUCu -5'
25660 5' -56.5 NC_005337.1 + 38593 0.66 0.876913
Target:  5'- aGGCGUGgCGcGAGCGCagCGUGGGc- -3'
miRNA:   3'- cCUGCGCgGC-CUCGCGaaGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 38763 0.66 0.876913
Target:  5'- uGGCGaGCCGGuGCGCg--GUGGAGc -3'
miRNA:   3'- cCUGCgCGGCCuCGCGaagCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 39165 0.66 0.897346
Target:  5'- aGGACGa-CCGcGAGCGCcUCGaGGAGu -3'
miRNA:   3'- -CCUGCgcGGC-CUCGCGaAGCaCUUCu -5'
25660 5' -56.5 NC_005337.1 + 39278 0.66 0.867446
Target:  5'- uGGcCGCGCUGGcGGCGgcggugauauuuuaCUUCGUGgcGGu -3'
miRNA:   3'- -CCuGCGCGGCC-UCGC--------------GAAGCACuuCU- -5'
25660 5' -56.5 NC_005337.1 + 39550 0.66 0.890088
Target:  5'- cGGCGCcCCGGcgGGCGCUcggguacucguccUCGUGGAc- -3'
miRNA:   3'- cCUGCGcGGCC--UCGCGA-------------AGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 42129 0.67 0.838606
Target:  5'- aGGACgGCGCUGGcccgcGGCGCgucCGgggucugGAAGAg -3'
miRNA:   3'- -CCUG-CGCGGCC-----UCGCGaa-GCa------CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 42542 0.76 0.358571
Target:  5'- cGGACGCGCUGcGGGCGCUggugCGgcugcggcUGGAGGc -3'
miRNA:   3'- -CCUGCGCGGC-CUCGCGAa---GC--------ACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 43838 0.7 0.679826
Target:  5'- -aGCGgGCCGGcGGCGCg--GUGGAGAu -3'
miRNA:   3'- ccUGCgCGGCC-UCGCGaagCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 45952 0.71 0.639201
Target:  5'- -aGCGCGCCGGAGCGCacgggcauUUCcaGGAGc -3'
miRNA:   3'- ccUGCGCGGCCUCGCG--------AAGcaCUUCu -5'
25660 5' -56.5 NC_005337.1 + 47525 0.67 0.83036
Target:  5'- uGGccauCGUGCCGGAGCGggaccUCGUGGGc- -3'
miRNA:   3'- -CCu---GCGCGGCCUCGCga---AGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 48099 1.11 0.001892
Target:  5'- cGGACGCGCCGGAGCGCUUCGUGAAGAc -3'
miRNA:   3'- -CCUGCGCGGCCUCGCGAAGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 50385 0.66 0.890759
Target:  5'- cGGGCgccugGCGCgGGGGCGCgccgcgcgUCgGUGAcGGAg -3'
miRNA:   3'- -CCUG-----CGCGgCCUCGCGa-------AG-CACU-UCU- -5'
25660 5' -56.5 NC_005337.1 + 52120 0.69 0.709915
Target:  5'- cGACGgGCCGGccauGGC-CUUCGUGGAc- -3'
miRNA:   3'- cCUGCgCGGCC----UCGcGAAGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 54097 0.67 0.854533
Target:  5'- uGGACgGCGUguaCGG-GCGCUgcuaCGUGGAGc -3'
miRNA:   3'- -CCUG-CGCG---GCCuCGCGAa---GCACUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.