miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 105694 0.67 0.821935
Target:  5'- cGGugGCGCUGGucgcAGCGCccgUCGUa---- -3'
miRNA:   3'- -CCugCGCGGCC----UCGCGa--AGCAcuucu -5'
25660 5' -56.5 NC_005337.1 + 102999 0.71 0.62901
Target:  5'- cGGACGUGCCcGAGCGCggcccgcagGUGggGc -3'
miRNA:   3'- -CCUGCGCGGcCUCGCGaag------CACuuCu -5'
25660 5' -56.5 NC_005337.1 + 102889 0.72 0.588347
Target:  5'- uGAUGCGCCGcGAGgGCggCaUGAAGAg -3'
miRNA:   3'- cCUGCGCGGC-CUCgCGaaGcACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 102315 0.66 0.876913
Target:  5'- -cAUGCGCCuGGGGCuCcgCGUGGAGGc -3'
miRNA:   3'- ccUGCGCGG-CCUCGcGaaGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 101252 0.66 0.897346
Target:  5'- --uCGCGCUGGAcgGCGCggaCGcGAAGAu -3'
miRNA:   3'- ccuGCGCGGCCU--CGCGaa-GCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 99846 0.69 0.758632
Target:  5'- cGGACGauggcgaGgUGGAGCGCUUCGagcUGAGcGAc -3'
miRNA:   3'- -CCUGCg------CgGCCUCGCGAAGC---ACUU-CU- -5'
25660 5' -56.5 NC_005337.1 + 99601 0.66 0.883253
Target:  5'- gGGACuGCGCCGuGAGCaacgGCUacgUCGUGcgcgugcGGGAc -3'
miRNA:   3'- -CCUG-CGCGGC-CUCG----CGA---AGCAC-------UUCU- -5'
25660 5' -56.5 NC_005337.1 + 99460 0.7 0.648367
Target:  5'- uGGACGCGCgCGugcgcgaGGGCGuCUUCGUGGc-- -3'
miRNA:   3'- -CCUGCGCG-GC-------CUCGC-GAAGCACUucu -5'
25660 5' -56.5 NC_005337.1 + 98486 0.7 0.669706
Target:  5'- gGGGCGCGCCGGcGGCGUccgUCaUGAc-- -3'
miRNA:   3'- -CCUGCGCGGCC-UCGCGa--AGcACUucu -5'
25660 5' -56.5 NC_005337.1 + 97080 0.66 0.876913
Target:  5'- aGGCGCGCCGcGGGUGCauaaaccUGGAGGu -3'
miRNA:   3'- cCUGCGCGGC-CUCGCGaagc---ACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 97044 0.67 0.821935
Target:  5'- uGGACGUGCUcauGCGCUucuUCGUGGAc- -3'
miRNA:   3'- -CCUGCGCGGccuCGCGA---AGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 96382 0.66 0.890759
Target:  5'- cGGuCGCGCCcGAGCagGCggCG-GAGGAc -3'
miRNA:   3'- -CCuGCGCGGcCUCG--CGaaGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 95773 0.69 0.719825
Target:  5'- aGGCGCGCCcGGGCGgccaccucCUUCGaGAGGAa -3'
miRNA:   3'- cCUGCGCGGcCUCGC--------GAAGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 95348 0.74 0.461607
Target:  5'- ---aGCGCCGGAGCGCcgagUCGccGAAGGc -3'
miRNA:   3'- ccugCGCGGCCUCGCGa---AGCa-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 95340 0.67 0.821935
Target:  5'- -aGCGCGCCGuGGCGCUgCGacaccGggGAg -3'
miRNA:   3'- ccUGCGCGGCcUCGCGAaGCa----CuuCU- -5'
25660 5' -56.5 NC_005337.1 + 92968 0.69 0.758632
Target:  5'- uGGACGCcacGCUGGAcaacGCGCUggcCGUGAuGGc -3'
miRNA:   3'- -CCUGCG---CGGCCU----CGCGAa--GCACUuCU- -5'
25660 5' -56.5 NC_005337.1 + 91853 0.68 0.768079
Target:  5'- cGAUGUccgucaGCUuGAGcCGCUUCGUGAGGAu -3'
miRNA:   3'- cCUGCG------CGGcCUC-GCGAAGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 90504 0.67 0.83036
Target:  5'- aGGAUGCGCgagaCGGuGUGCUUgGUcacGGAGGg -3'
miRNA:   3'- -CCUGCGCG----GCCuCGCGAAgCA---CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 90445 0.68 0.768079
Target:  5'- -cGCGcCGCCGGccCGCUgcagCGUGGAGGu -3'
miRNA:   3'- ccUGC-GCGGCCucGCGAa---GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 88968 0.66 0.869663
Target:  5'- aGGGCGCGgucCCGGuGUGCgaccuggCGcgGGAGAa -3'
miRNA:   3'- -CCUGCGC---GGCCuCGCGaa-----GCa-CUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.