miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 88442 0.71 0.608644
Target:  5'- cGGACGCGCCGGu-CGCggaacacgcCGUcGAGGAg -3'
miRNA:   3'- -CCUGCGCGGCCucGCGaa-------GCA-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 88336 0.71 0.608644
Target:  5'- -cGCGCGCCGGcGCGCg-CGaGAAGAc -3'
miRNA:   3'- ccUGCGCGGCCuCGCGaaGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 88263 0.77 0.306347
Target:  5'- cGGCGCGCCGGcgGGCGCcgCG-GAGGAc -3'
miRNA:   3'- cCUGCGCGGCC--UCGCGaaGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 88100 0.69 0.719825
Target:  5'- uGGugGaCGCCguGGAGCGggUCGUcuuccgGAAGAa -3'
miRNA:   3'- -CCugC-GCGG--CCUCGCgaAGCA------CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 88030 0.66 0.883947
Target:  5'- aGGAUGUGCCGGcgcacGUGCacggggUCGUGcuGGAu -3'
miRNA:   3'- -CCUGCGCGGCCu----CGCGa-----AGCACu-UCU- -5'
25660 5' -56.5 NC_005337.1 + 87906 0.75 0.408061
Target:  5'- uGACGCGCUGGcgcgccugcgccGGCGCUUCGUGc--- -3'
miRNA:   3'- cCUGCGCGGCC------------UCGCGAAGCACuucu -5'
25660 5' -56.5 NC_005337.1 + 84570 0.72 0.578243
Target:  5'- cGGCGCGCCgagcccGGGGCGCUggUGUGGGuGAc -3'
miRNA:   3'- cCUGCGCGG------CCUCGCGAa-GCACUU-CU- -5'
25660 5' -56.5 NC_005337.1 + 84228 0.71 0.62901
Target:  5'- cGGGCGCgGCCuGcGGGCaCUUgGUGAAGAg -3'
miRNA:   3'- -CCUGCG-CGG-C-CUCGcGAAgCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 80587 0.68 0.786605
Target:  5'- aGGACGCGCCcG-GCGCUUC---AAGGg -3'
miRNA:   3'- -CCUGCGCGGcCuCGCGAAGcacUUCU- -5'
25660 5' -56.5 NC_005337.1 + 80189 0.67 0.838606
Target:  5'- cGGACGCgcuccuGCCGcGGGCGC----UGAAGAa -3'
miRNA:   3'- -CCUGCG------CGGC-CUCGCGaagcACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 80084 0.67 0.838606
Target:  5'- cGGACGaCGuCCGGuGCGCgugCcUGAAGc -3'
miRNA:   3'- -CCUGC-GC-GGCCuCGCGaa-GcACUUCu -5'
25660 5' -56.5 NC_005337.1 + 80039 0.66 0.897346
Target:  5'- cGGACGCGCCGGA-CGa-----GGAGAu -3'
miRNA:   3'- -CCUGCGCGGCCUcGCgaagcaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 78555 0.76 0.33545
Target:  5'- cGGGCGCGCCGu-GCGCgUCGUgcuuGAAGAu -3'
miRNA:   3'- -CCUGCGCGGCcuCGCGaAGCA----CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 77415 0.67 0.854533
Target:  5'- uGGAUGUGCgGGcccAGCGaggcccgCGUGGAGGg -3'
miRNA:   3'- -CCUGCGCGgCC---UCGCgaa----GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 75617 0.66 0.883947
Target:  5'- gGGA-GCGCCgaGGAcGCGCgggccgUCGUGAuGGg -3'
miRNA:   3'- -CCUgCGCGG--CCU-CGCGa-----AGCACUuCU- -5'
25660 5' -56.5 NC_005337.1 + 74586 0.66 0.862201
Target:  5'- cGGACGCGCUGucGCGCaUCGg----- -3'
miRNA:   3'- -CCUGCGCGGCcuCGCGaAGCacuucu -5'
25660 5' -56.5 NC_005337.1 + 73916 0.83 0.147287
Target:  5'- aGAUGcCGCUGGGGCGCaUCGUGggGAa -3'
miRNA:   3'- cCUGC-GCGGCCUCGCGaAGCACuuCU- -5'
25660 5' -56.5 NC_005337.1 + 73399 0.66 0.869663
Target:  5'- cGACGaaaCGCCGGAcGCGCggUCGgaguuccaGGAGAu -3'
miRNA:   3'- cCUGC---GCGGCCU-CGCGa-AGCa-------CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 71319 0.67 0.83036
Target:  5'- uGGACGcCGCUGGAGCacuuguucauGCUgagUCGccacGAAGAc -3'
miRNA:   3'- -CCUGC-GCGGCCUCG----------CGA---AGCa---CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 71287 0.67 0.813338
Target:  5'- cGugGCGCUGGuGCGCUUCc------ -3'
miRNA:   3'- cCugCGCGGCCuCGCGAAGcacuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.