miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 69247 0.71 0.62901
Target:  5'- uGGACGUGCCGGuGaCGCUg-GUGguGGg -3'
miRNA:   3'- -CCUGCGCGGCCuC-GCGAagCACuuCU- -5'
25660 5' -56.5 NC_005337.1 + 68244 0.66 0.876913
Target:  5'- cGGAgCGCgGCCGGcGCGUgggcgagCGUcGAGGAc -3'
miRNA:   3'- -CCU-GCG-CGGCCuCGCGaa-----GCA-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 67464 0.66 0.883947
Target:  5'- cGGCGCaGCCGc--CGCUUCGUcGAGGGc -3'
miRNA:   3'- cCUGCG-CGGCcucGCGAAGCA-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 66774 0.67 0.821935
Target:  5'- cGGGC-CGCUGGGcGUGCUcuccaacuaCGUGAAGAc -3'
miRNA:   3'- -CCUGcGCGGCCU-CGCGAa--------GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 66626 0.67 0.81247
Target:  5'- cGGugGUGCUGGAGCacgcgcgcgaccaGCUgcugucCGUGAuGGAc -3'
miRNA:   3'- -CCugCGCGGCCUCG-------------CGAa-----GCACU-UCU- -5'
25660 5' -56.5 NC_005337.1 + 66095 0.66 0.890759
Target:  5'- cGGAgGCGCugugCGGcgucuGCGCgcgCGUGGAGu -3'
miRNA:   3'- -CCUgCGCG----GCCu----CGCGaa-GCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 64808 0.66 0.862201
Target:  5'- cGGcACGaCGCCGGAacacccagGCGCUUgagGAGGAa -3'
miRNA:   3'- -CC-UGC-GCGGCCU--------CGCGAAgcaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 64273 0.74 0.443337
Target:  5'- cGGGCGCGCCGGAGCaacuGCUcuUCGaccgucUGAGcGAg -3'
miRNA:   3'- -CCUGCGCGGCCUCG----CGA--AGC------ACUU-CU- -5'
25660 5' -56.5 NC_005337.1 + 63388 0.66 0.897346
Target:  5'- uGGugGCGCCGcaGAGCGCgc--UGGAc- -3'
miRNA:   3'- -CCugCGCGGC--CUCGCGaagcACUUcu -5'
25660 5' -56.5 NC_005337.1 + 59465 0.66 0.897346
Target:  5'- --cCGCGCUGGAgagGCGCaggUCcccgGUGAAGAu -3'
miRNA:   3'- ccuGCGCGGCCU---CGCGa--AG----CACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 58730 0.66 0.876913
Target:  5'- uGGGCGCGCCGGcgcgGGUGCacCG-GAGc- -3'
miRNA:   3'- -CCUGCGCGGCC----UCGCGaaGCaCUUcu -5'
25660 5' -56.5 NC_005337.1 + 58306 0.68 0.803695
Target:  5'- aGGACGUGCCGGAcaaguccGUGCUcUCGaagcAGGAg -3'
miRNA:   3'- -CCUGCGCGGCCU-------CGCGA-AGCac--UUCU- -5'
25660 5' -56.5 NC_005337.1 + 57595 0.69 0.709915
Target:  5'- -cACGCuGCUGcuGCGCUUCGUGGAGc -3'
miRNA:   3'- ccUGCG-CGGCcuCGCGAAGCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 56303 0.7 0.679826
Target:  5'- cGGcCGCuGCUcgagaucucgcaGGAGCGCUUCGUGGu-- -3'
miRNA:   3'- -CCuGCG-CGG------------CCUCGCGAAGCACUucu -5'
25660 5' -56.5 NC_005337.1 + 56218 0.66 0.897346
Target:  5'- aGGACGUGgCGGAgggGCGgaUCGUGc--- -3'
miRNA:   3'- -CCUGCGCgGCCU---CGCgaAGCACuucu -5'
25660 5' -56.5 NC_005337.1 + 56085 0.67 0.813338
Target:  5'- uGAC-CGa-GGAGCGCgaCGUGGAGAa -3'
miRNA:   3'- cCUGcGCggCCUCGCGaaGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 55725 0.66 0.876913
Target:  5'- cGACGCGCaCGGcGCGCc-CGUGuacGGGu -3'
miRNA:   3'- cCUGCGCG-GCCuCGCGaaGCACu--UCU- -5'
25660 5' -56.5 NC_005337.1 + 55360 0.76 0.374594
Target:  5'- -cGCGCGCUcuucgaGGAGCGCUcCGUGAAGu -3'
miRNA:   3'- ccUGCGCGG------CCUCGCGAaGCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 54097 0.67 0.854533
Target:  5'- uGGACgGCGUguaCGG-GCGCUgcuaCGUGGAGc -3'
miRNA:   3'- -CCUG-CGCG---GCCuCGCGAa---GCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 52120 0.69 0.709915
Target:  5'- cGACGgGCCGGccauGGC-CUUCGUGGAc- -3'
miRNA:   3'- cCUGCgCGGCC----UCGcGAAGCACUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.