miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 31765 0.75 0.425481
Target:  5'- cGugGCGUCGGAGCuGCU-CGgGAGGAg -3'
miRNA:   3'- cCugCGCGGCCUCG-CGAaGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 55360 0.76 0.374594
Target:  5'- -cGCGCGCUcuucgaGGAGCGCUcCGUGAAGu -3'
miRNA:   3'- ccUGCGCGG------CCUCGCGAaGCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 42542 0.76 0.358571
Target:  5'- cGGACGCGCUGcGGGCGCUggugCGgcugcggcUGGAGGc -3'
miRNA:   3'- -CCUGCGCGGC-CUCGCGAa---GC--------ACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 22659 0.78 0.292537
Target:  5'- cGGACGCGCggcugcgGGAGCGCUUCGcgGAcauGGAc -3'
miRNA:   3'- -CCUGCGCGg------CCUCGCGAAGCa-CU---UCU- -5'
25660 5' -56.5 NC_005337.1 + 2686 0.78 0.272741
Target:  5'- aGGACGU-CCGGAGCuGCggCGUGggGAc -3'
miRNA:   3'- -CCUGCGcGGCCUCG-CGaaGCACuuCU- -5'
25660 5' -56.5 NC_005337.1 + 32684 0.7 0.659557
Target:  5'- aGAgGCGUCGGAGCGCguagUCcaUGAAGu -3'
miRNA:   3'- cCUgCGCGGCCUCGCGa---AGc-ACUUCu -5'
25660 5' -56.5 NC_005337.1 + 20796 0.7 0.66565
Target:  5'- cGGGCGUGCCGGAGCuggacagGAAGGu -3'
miRNA:   3'- -CCUGCGCGGCCUCGcgaagcaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 131180 0.68 0.786605
Target:  5'- uGAUGCGCgCGGAggagggccaGCGCcccucCGUGGAGAu -3'
miRNA:   3'- cCUGCGCG-GCCU---------CGCGaa---GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 80587 0.68 0.786605
Target:  5'- aGGACGCGCCcG-GCGCUUC---AAGGg -3'
miRNA:   3'- -CCUGCGCGGcCuCGCGAAGcacUUCU- -5'
25660 5' -56.5 NC_005337.1 + 37906 0.68 0.777407
Target:  5'- cGGGCGCGaCCGGgucgauAGCccccGCUUCGcGAAGu -3'
miRNA:   3'- -CCUGCGC-GGCC------UCG----CGAAGCaCUUCu -5'
25660 5' -56.5 NC_005337.1 + 91853 0.68 0.768079
Target:  5'- cGAUGUccgucaGCUuGAGcCGCUUCGUGAGGAu -3'
miRNA:   3'- cCUGCG------CGGcCUC-GCGAAGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 99846 0.69 0.758632
Target:  5'- cGGACGauggcgaGgUGGAGCGCUUCGagcUGAGcGAc -3'
miRNA:   3'- -CCUGCg------CgGCCUCGCGAAGC---ACUU-CU- -5'
25660 5' -56.5 NC_005337.1 + 95773 0.69 0.719825
Target:  5'- aGGCGCGCCcGGGCGgccaccucCUUCGaGAGGAa -3'
miRNA:   3'- cCUGCGCGGcCUCGC--------GAAGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 57595 0.69 0.709915
Target:  5'- -cACGCuGCUGcuGCGCUUCGUGGAGc -3'
miRNA:   3'- ccUGCG-CGGCcuCGCGAAGCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 52120 0.69 0.709915
Target:  5'- cGACGgGCCGGccauGGC-CUUCGUGGAc- -3'
miRNA:   3'- cCUGCgCGGCC----UCGcGAAGCACUUcu -5'
25660 5' -56.5 NC_005337.1 + 38475 0.7 0.699938
Target:  5'- cGGuGCGCGCCGGGcGCGCgcgUCGccGAGc -3'
miRNA:   3'- -CC-UGCGCGGCCU-CGCGa--AGCacUUCu -5'
25660 5' -56.5 NC_005337.1 + 21809 0.7 0.699938
Target:  5'- cGACGCGCCGcAGCuCUUCGUGc--- -3'
miRNA:   3'- cCUGCGCGGCcUCGcGAAGCACuucu -5'
25660 5' -56.5 NC_005337.1 + 110365 0.7 0.679826
Target:  5'- cGGGCGCGCgGGcGCGCggcagCGacaggcgGAGGAg -3'
miRNA:   3'- -CCUGCGCGgCCuCGCGaa---GCa------CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 43838 0.7 0.679826
Target:  5'- -aGCGgGCCGGcGGCGCg--GUGGAGAu -3'
miRNA:   3'- ccUGCgCGGCC-UCGCGaagCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 98486 0.7 0.669706
Target:  5'- gGGGCGCGCCGGcGGCGUccgUCaUGAc-- -3'
miRNA:   3'- -CCUGCGCGGCC-UCGCGa--AGcACUucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.