Results 61 - 80 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 38475 | 0.7 | 0.699938 |
Target: 5'- cGGuGCGCGCCGGGcGCGCgcgUCGccGAGc -3' miRNA: 3'- -CC-UGCGCGGCCU-CGCGa--AGCacUUCu -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 52120 | 0.69 | 0.709915 |
Target: 5'- cGACGgGCCGGccauGGC-CUUCGUGGAc- -3' miRNA: 3'- cCUGCgCGGCC----UCGcGAAGCACUUcu -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 57595 | 0.69 | 0.709915 |
Target: 5'- -cACGCuGCUGcuGCGCUUCGUGGAGc -3' miRNA: 3'- ccUGCG-CGGCcuCGCGAAGCACUUCu -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 119639 | 0.71 | 0.62901 |
Target: 5'- aGGACGCcUCGGuGCGCUUCGUc---- -3' miRNA: 3'- -CCUGCGcGGCCuCGCGAAGCAcuucu -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 56303 | 0.7 | 0.679826 |
Target: 5'- cGGcCGCuGCUcgagaucucgcaGGAGCGCUUCGUGGu-- -3' miRNA: 3'- -CCuGCG-CGG------------CCUCGCGAAGCACUucu -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 108996 | 0.7 | 0.695932 |
Target: 5'- cGGACGCugGCCgaGGAGgGCUcgcggaacgugggCGUGGAGAu -3' miRNA: 3'- -CCUGCG--CGG--CCUCgCGAa------------GCACUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 88100 | 0.69 | 0.719825 |
Target: 5'- uGGugGaCGCCguGGAGCGggUCGUcuuccgGAAGAa -3' miRNA: 3'- -CCugC-GCGG--CCUCGCgaAGCA------CUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 10329 | 0.69 | 0.739414 |
Target: 5'- -aGCGCGaCCGGcuCGCggggCGUGggGAa -3' miRNA: 3'- ccUGCGC-GGCCucGCGaa--GCACuuCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 131397 | 0.69 | 0.749074 |
Target: 5'- cGGACGcCGCCGGccaCGCUg-GUGAGGc -3' miRNA: 3'- -CCUGC-GCGGCCuc-GCGAagCACUUCu -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 92968 | 0.69 | 0.758632 |
Target: 5'- uGGACGCcacGCUGGAcaacGCGCUggcCGUGAuGGc -3' miRNA: 3'- -CCUGCG---CGGCCU----CGCGAa--GCACUuCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 88442 | 0.71 | 0.608644 |
Target: 5'- cGGACGCGCCGGu-CGCggaacacgcCGUcGAGGAg -3' miRNA: 3'- -CCUGCGCGGCCucGCGaa-------GCA-CUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 102889 | 0.72 | 0.588347 |
Target: 5'- uGAUGCGCCGcGAGgGCggCaUGAAGAg -3' miRNA: 3'- cCUGCGCGGC-CUCgCGaaGcACUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 117160 | 0.72 | 0.578243 |
Target: 5'- cGGGCGCGCaUGGAGaCGCUccucgcguUCGccaugGAAGAg -3' miRNA: 3'- -CCUGCGCG-GCCUC-GCGA--------AGCa----CUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 84570 | 0.72 | 0.578243 |
Target: 5'- cGGCGCGCCgagcccGGGGCGCUggUGUGGGuGAc -3' miRNA: 3'- cCUGCGCGG------CCUCGCGAa-GCACUU-CU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 132766 | 0.72 | 0.568177 |
Target: 5'- cGGACGCGCUGGcGCGCgccgagGUGAcGGu -3' miRNA: 3'- -CCUGCGCGGCCuCGCGaag---CACUuCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 106642 | 0.72 | 0.567172 |
Target: 5'- uGGCGCGCuccgccaagauccCGGAGCGCgagCGgcggGAGGAg -3' miRNA: 3'- cCUGCGCG-------------GCCUCGCGaa-GCa---CUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 87906 | 0.75 | 0.408061 |
Target: 5'- uGACGCGCUGGcgcgccugcgccGGCGCUUCGUGc--- -3' miRNA: 3'- cCUGCGCGGCC------------UCGCGAAGCACuucu -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 78555 | 0.76 | 0.33545 |
Target: 5'- cGGGCGCGCCGu-GCGCgUCGUgcuuGAAGAu -3' miRNA: 3'- -CCUGCGCGGCcuCGCGaAGCA----CUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 88263 | 0.77 | 0.306347 |
Target: 5'- cGGCGCGCCGGcgGGCGCcgCG-GAGGAc -3' miRNA: 3'- cCUGCGCGGCC--UCGCGaaGCaCUUCU- -5' |
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25660 | 5' | -56.5 | NC_005337.1 | + | 80039 | 0.66 | 0.897346 |
Target: 5'- cGGACGCGCCGGA-CGa-----GGAGAu -3' miRNA: 3'- -CCUGCGCGGCCUcGCgaagcaCUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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