miRNA display CGI


Results 81 - 100 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 993 0.67 0.854533
Target:  5'- cGGCGCG-CGGAGgGCgggcgUCGccUGGAGGc -3'
miRNA:   3'- cCUGCGCgGCCUCgCGa----AGC--ACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 58306 0.68 0.803695
Target:  5'- aGGACGUGCCGGAcaaguccGUGCUcUCGaagcAGGAg -3'
miRNA:   3'- -CCUGCGCGGCCU-------CGCGA-AGCac--UUCU- -5'
25660 5' -56.5 NC_005337.1 + 37116 0.68 0.786605
Target:  5'- ---aGCGCCGaGGCGCcgUCGUaGGAGAc -3'
miRNA:   3'- ccugCGCGGCcUCGCGa-AGCA-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 88263 0.77 0.306347
Target:  5'- cGGCGCGCCGGcgGGCGCcgCG-GAGGAc -3'
miRNA:   3'- cCUGCGCGGCC--UCGCGaaGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 78555 0.76 0.33545
Target:  5'- cGGGCGCGCCGu-GCGCgUCGUgcuuGAAGAu -3'
miRNA:   3'- -CCUGCGCGGCcuCGCGaAGCA----CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 87906 0.75 0.408061
Target:  5'- uGACGCGCUGGcgcgccugcgccGGCGCUUCGUGc--- -3'
miRNA:   3'- cCUGCGCGGCC------------UCGCGAAGCACuucu -5'
25660 5' -56.5 NC_005337.1 + 106642 0.72 0.567172
Target:  5'- uGGCGCGCuccgccaagauccCGGAGCGCgagCGgcggGAGGAg -3'
miRNA:   3'- cCUGCGCG-------------GCCUCGCGaa-GCa---CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 132766 0.72 0.568177
Target:  5'- cGGACGCGCUGGcGCGCgccgagGUGAcGGu -3'
miRNA:   3'- -CCUGCGCGGCCuCGCGaag---CACUuCU- -5'
25660 5' -56.5 NC_005337.1 + 84570 0.72 0.578243
Target:  5'- cGGCGCGCCgagcccGGGGCGCUggUGUGGGuGAc -3'
miRNA:   3'- cCUGCGCGG------CCUCGCGAa-GCACUU-CU- -5'
25660 5' -56.5 NC_005337.1 + 117160 0.72 0.578243
Target:  5'- cGGGCGCGCaUGGAGaCGCUccucgcguUCGccaugGAAGAg -3'
miRNA:   3'- -CCUGCGCG-GCCUC-GCGA--------AGCa----CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 102889 0.72 0.588347
Target:  5'- uGAUGCGCCGcGAGgGCggCaUGAAGAg -3'
miRNA:   3'- cCUGCGCGGC-CUCgCGaaGcACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 88442 0.71 0.608644
Target:  5'- cGGACGCGCCGGu-CGCggaacacgcCGUcGAGGAg -3'
miRNA:   3'- -CCUGCGCGGCCucGCGaa-------GCA-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 119639 0.71 0.62901
Target:  5'- aGGACGCcUCGGuGCGCUUCGUc---- -3'
miRNA:   3'- -CCUGCGcGGCCuCGCGAAGCAcuucu -5'
25660 5' -56.5 NC_005337.1 + 56303 0.7 0.679826
Target:  5'- cGGcCGCuGCUcgagaucucgcaGGAGCGCUUCGUGGu-- -3'
miRNA:   3'- -CCuGCG-CGG------------CCUCGCGAAGCACUucu -5'
25660 5' -56.5 NC_005337.1 + 108996 0.7 0.695932
Target:  5'- cGGACGCugGCCgaGGAGgGCUcgcggaacgugggCGUGGAGAu -3'
miRNA:   3'- -CCUGCG--CGG--CCUCgCGAa------------GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 88100 0.69 0.719825
Target:  5'- uGGugGaCGCCguGGAGCGggUCGUcuuccgGAAGAa -3'
miRNA:   3'- -CCugC-GCGG--CCUCGCgaAGCA------CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 10329 0.69 0.739414
Target:  5'- -aGCGCGaCCGGcuCGCggggCGUGggGAa -3'
miRNA:   3'- ccUGCGC-GGCCucGCGaa--GCACuuCU- -5'
25660 5' -56.5 NC_005337.1 + 131397 0.69 0.749074
Target:  5'- cGGACGcCGCCGGccaCGCUg-GUGAGGc -3'
miRNA:   3'- -CCUGC-GCGGCCuc-GCGAagCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 92968 0.69 0.758632
Target:  5'- uGGACGCcacGCUGGAcaacGCGCUggcCGUGAuGGc -3'
miRNA:   3'- -CCUGCG---CGGCCU----CGCGAa--GCACUuCU- -5'
25660 5' -56.5 NC_005337.1 + 90445 0.68 0.768079
Target:  5'- -cGCGcCGCCGGccCGCUgcagCGUGGAGGu -3'
miRNA:   3'- ccUGC-GCGGCCucGCGAa---GCACUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.