Results 21 - 40 of 118 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 95340 | 0.67 | 0.821935 |
Target: 5'- -aGCGCGCCGuGGCGCUgCGacaccGggGAg -3' miRNA: 3'- ccUGCGCGGCcUCGCGAaGCa----CuuCU- -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 58306 | 0.68 | 0.803695 |
Target: 5'- aGGACGUGCCGGAcaaguccGUGCUcUCGaagcAGGAg -3' miRNA: 3'- -CCUGCGCGGCCU-------CGCGA-AGCac--UUCU- -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 119639 | 0.71 | 0.62901 |
Target: 5'- aGGACGCcUCGGuGCGCUUCGUc---- -3' miRNA: 3'- -CCUGCGcGGCCuCGCGAAGCAcuucu -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 87906 | 0.75 | 0.408061 |
Target: 5'- uGACGCGCUGGcgcgccugcgccGGCGCUUCGUGc--- -3' miRNA: 3'- cCUGCGCGGCC------------UCGCGAAGCACuucu -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 64808 | 0.66 | 0.862201 |
Target: 5'- cGGcACGaCGCCGGAacacccagGCGCUUgagGAGGAa -3' miRNA: 3'- -CC-UGC-GCGGCCU--------CGCGAAgcaCUUCU- -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 116763 | 0.67 | 0.83779 |
Target: 5'- aGGACaccuGCGCCGGAacaacaaGCGCUgCGUGu--- -3' miRNA: 3'- -CCUG----CGCGGCCU-------CGCGAaGCACuucu -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 90445 | 0.68 | 0.768079 |
Target: 5'- -cGCGcCGCCGGccCGCUgcagCGUGGAGGu -3' miRNA: 3'- ccUGC-GCGGCCucGCGAa---GCACUUCU- -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 78555 | 0.76 | 0.33545 |
Target: 5'- cGGGCGCGCCGu-GCGCgUCGUgcuuGAAGAu -3' miRNA: 3'- -CCUGCGCGGCcuCGCGaAGCA----CUUCU- -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 71319 | 0.67 | 0.83036 |
Target: 5'- uGGACGcCGCUGGAGCacuuguucauGCUgagUCGccacGAAGAc -3' miRNA: 3'- -CCUGC-GCGGCCUCG----------CGA---AGCa---CUUCU- -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 88263 | 0.77 | 0.306347 |
Target: 5'- cGGCGCGCCGGcgGGCGCcgCG-GAGGAc -3' miRNA: 3'- cCUGCGCGGCC--UCGCGaaGCaCUUCU- -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 37116 | 0.68 | 0.786605 |
Target: 5'- ---aGCGCCGaGGCGCcgUCGUaGGAGAc -3' miRNA: 3'- ccugCGCGGCcUCGCGa-AGCA-CUUCU- -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 97044 | 0.67 | 0.821935 |
Target: 5'- uGGACGUGCUcauGCGCUucuUCGUGGAc- -3' miRNA: 3'- -CCUGCGCGGccuCGCGA---AGCACUUcu -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 10329 | 0.69 | 0.739414 |
Target: 5'- -aGCGCGaCCGGcuCGCggggCGUGggGAa -3' miRNA: 3'- ccUGCGC-GGCCucGCGaa--GCACuuCU- -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 56303 | 0.7 | 0.679826 |
Target: 5'- cGGcCGCuGCUcgagaucucgcaGGAGCGCUUCGUGGu-- -3' miRNA: 3'- -CCuGCG-CGG------------CCUCGCGAAGCACUucu -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 117160 | 0.72 | 0.578243 |
Target: 5'- cGGGCGCGCaUGGAGaCGCUccucgcguUCGccaugGAAGAg -3' miRNA: 3'- -CCUGCGCG-GCCUC-GCGA--------AGCa----CUUCU- -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 106642 | 0.72 | 0.567172 |
Target: 5'- uGGCGCGCuccgccaagauccCGGAGCGCgagCGgcggGAGGAg -3' miRNA: 3'- cCUGCGCG-------------GCCUCGCGaa-GCa---CUUCU- -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 73399 | 0.66 | 0.869663 |
Target: 5'- cGACGaaaCGCCGGAcGCGCggUCGgaguuccaGGAGAu -3' miRNA: 3'- cCUGC---GCGGCCU-CGCGa-AGCa-------CUUCU- -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 35760 | 0.66 | 0.862201 |
Target: 5'- uGGGCGCGaCCGGgaucguGGCGCgugUCaUGAcGGAc -3' miRNA: 3'- -CCUGCGC-GGCC------UCGCGa--AGcACU-UCU- -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 14282 | 0.67 | 0.854533 |
Target: 5'- uGGuCGUGa-GGAGCGaCUUCGUGucauGGAu -3' miRNA: 3'- -CCuGCGCggCCUCGC-GAAGCACu---UCU- -5' |
|||||||
25660 | 5' | -56.5 | NC_005337.1 | + | 80189 | 0.67 | 0.838606 |
Target: 5'- cGGACGCgcuccuGCCGcGGGCGC----UGAAGAa -3' miRNA: 3'- -CCUGCG------CGGC-CUCGCGaagcACUUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home