miRNA display CGI


Results 41 - 60 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 88263 0.77 0.306347
Target:  5'- cGGCGCGCCGGcgGGCGCcgCG-GAGGAc -3'
miRNA:   3'- cCUGCGCGGCC--UCGCGaaGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 48099 1.11 0.001892
Target:  5'- cGGACGCGCCGGAGCGCUUCGUGAAGAc -3'
miRNA:   3'- -CCUGCGCGGCCUCGCGAAGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 96382 0.66 0.890759
Target:  5'- cGGuCGCGCCcGAGCagGCggCG-GAGGAc -3'
miRNA:   3'- -CCuGCGCGGcCUCG--CGaaGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 80084 0.67 0.838606
Target:  5'- cGGACGaCGuCCGGuGCGCgugCcUGAAGc -3'
miRNA:   3'- -CCUGC-GC-GGCCuCGCGaa-GcACUUCu -5'
25660 5' -56.5 NC_005337.1 + 102315 0.66 0.876913
Target:  5'- -cAUGCGCCuGGGGCuCcgCGUGGAGGc -3'
miRNA:   3'- ccUGCGCGG-CCUCGcGaaGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 73399 0.66 0.869663
Target:  5'- cGACGaaaCGCCGGAcGCGCggUCGgaguuccaGGAGAu -3'
miRNA:   3'- cCUGC---GCGGCCU-CGCGa-AGCa-------CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 35760 0.66 0.862201
Target:  5'- uGGGCGCGaCCGGgaucguGGCGCgugUCaUGAcGGAc -3'
miRNA:   3'- -CCUGCGC-GGCC------UCGCGa--AGcACU-UCU- -5'
25660 5' -56.5 NC_005337.1 + 71319 0.67 0.83036
Target:  5'- uGGACGcCGCUGGAGCacuuguucauGCUgagUCGccacGAAGAc -3'
miRNA:   3'- -CCUGC-GCGGCCUCG----------CGA---AGCa---CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 95340 0.67 0.821935
Target:  5'- -aGCGCGCCGuGGCGCUgCGacaccGggGAg -3'
miRNA:   3'- ccUGCGCGGCcUCGCGAaGCa----CuuCU- -5'
25660 5' -56.5 NC_005337.1 + 58306 0.68 0.803695
Target:  5'- aGGACGUGCCGGAcaaguccGUGCUcUCGaagcAGGAg -3'
miRNA:   3'- -CCUGCGCGGCCU-------CGCGA-AGCac--UUCU- -5'
25660 5' -56.5 NC_005337.1 + 10329 0.69 0.739414
Target:  5'- -aGCGCGaCCGGcuCGCggggCGUGggGAa -3'
miRNA:   3'- ccUGCGC-GGCCucGCGaa--GCACuuCU- -5'
25660 5' -56.5 NC_005337.1 + 56303 0.7 0.679826
Target:  5'- cGGcCGCuGCUcgagaucucgcaGGAGCGCUUCGUGGu-- -3'
miRNA:   3'- -CCuGCG-CGG------------CCUCGCGAAGCACUucu -5'
25660 5' -56.5 NC_005337.1 + 117160 0.72 0.578243
Target:  5'- cGGGCGCGCaUGGAGaCGCUccucgcguUCGccaugGAAGAg -3'
miRNA:   3'- -CCUGCGCG-GCCUC-GCGA--------AGCa----CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 106642 0.72 0.567172
Target:  5'- uGGCGCGCuccgccaagauccCGGAGCGCgagCGgcggGAGGAg -3'
miRNA:   3'- cCUGCGCG-------------GCCUCGCGaa-GCa---CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 75617 0.66 0.883947
Target:  5'- gGGA-GCGCCgaGGAcGCGCgggccgUCGUGAuGGg -3'
miRNA:   3'- -CCUgCGCGG--CCU-CGCGa-----AGCACUuCU- -5'
25660 5' -56.5 NC_005337.1 + 66095 0.66 0.890759
Target:  5'- cGGAgGCGCugugCGGcgucuGCGCgcgCGUGGAGu -3'
miRNA:   3'- -CCUgCGCG----GCCu----CGCGaa-GCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 123615 0.66 0.890759
Target:  5'- --cCGCGCuCGcGGGUGCUgacgcUCGUGGAGc -3'
miRNA:   3'- ccuGCGCG-GC-CUCGCGA-----AGCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 10440 0.68 0.795665
Target:  5'- -uGCGCGgCGGuGCGCgcgUCGUGcgccAGGAc -3'
miRNA:   3'- ccUGCGCgGCCuCGCGa--AGCAC----UUCU- -5'
25660 5' -56.5 NC_005337.1 + 32684 0.7 0.659557
Target:  5'- aGAgGCGUCGGAGCGCguagUCcaUGAAGu -3'
miRNA:   3'- cCUgCGCGGCCUCGCGa---AGc-ACUUCu -5'
25660 5' -56.5 NC_005337.1 + 66626 0.67 0.81247
Target:  5'- cGGugGUGCUGGAGCacgcgcgcgaccaGCUgcugucCGUGAuGGAc -3'
miRNA:   3'- -CCugCGCGGCCUCG-------------CGAa-----GCACU-UCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.