miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 131180 0.68 0.786605
Target:  5'- uGAUGCGCgCGGAggagggccaGCGCcccucCGUGGAGAu -3'
miRNA:   3'- cCUGCGCG-GCCU---------CGCGaa---GCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 80587 0.68 0.786605
Target:  5'- aGGACGCGCCcG-GCGCUUC---AAGGg -3'
miRNA:   3'- -CCUGCGCGGcCuCGCGAAGcacUUCU- -5'
25660 5' -56.5 NC_005337.1 + 37906 0.68 0.777407
Target:  5'- cGGGCGCGaCCGGgucgauAGCccccGCUUCGcGAAGu -3'
miRNA:   3'- -CCUGCGC-GGCC------UCG----CGAAGCaCUUCu -5'
25660 5' -56.5 NC_005337.1 + 64273 0.74 0.443337
Target:  5'- cGGGCGCGCCGGAGCaacuGCUcuUCGaccgucUGAGcGAg -3'
miRNA:   3'- -CCUGCGCGGCCUCG----CGA--AGC------ACUU-CU- -5'
25660 5' -56.5 NC_005337.1 + 99460 0.7 0.648367
Target:  5'- uGGACGCGCgCGugcgcgaGGGCGuCUUCGUGGc-- -3'
miRNA:   3'- -CCUGCGCG-GC-------CUCGC-GAAGCACUucu -5'
25660 5' -56.5 NC_005337.1 + 32684 0.7 0.659557
Target:  5'- aGAgGCGUCGGAGCGCguagUCcaUGAAGu -3'
miRNA:   3'- cCUgCGCGGCCUCGCGa---AGc-ACUUCu -5'
25660 5' -56.5 NC_005337.1 + 68244 0.66 0.876913
Target:  5'- cGGAgCGCgGCCGGcGCGUgggcgagCGUcGAGGAc -3'
miRNA:   3'- -CCU-GCG-CGGCCuCGCGaa-----GCA-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 121817 0.66 0.876913
Target:  5'- uGGACGaguucgguaugaCGCCGGccgacGUGC-UCGUGAAGu -3'
miRNA:   3'- -CCUGC------------GCGGCCu----CGCGaAGCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 129210 0.66 0.876913
Target:  5'- uGGACGCcCCaGAGCGCUgcuGUGGc-- -3'
miRNA:   3'- -CCUGCGcGGcCUCGCGAag-CACUucu -5'
25660 5' -56.5 NC_005337.1 + 91853 0.68 0.768079
Target:  5'- cGAUGUccgucaGCUuGAGcCGCUUCGUGAGGAu -3'
miRNA:   3'- cCUGCG------CGGcCUC-GCGAAGCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 99601 0.66 0.883253
Target:  5'- gGGACuGCGCCGuGAGCaacgGCUacgUCGUGcgcgugcGGGAc -3'
miRNA:   3'- -CCUG-CGCGGC-CUCG----CGA---AGCAC-------UUCU- -5'
25660 5' -56.5 NC_005337.1 + 88030 0.66 0.883947
Target:  5'- aGGAUGUGCCGGcgcacGUGCacggggUCGUGcuGGAu -3'
miRNA:   3'- -CCUGCGCGGCCu----CGCGa-----AGCACu-UCU- -5'
25660 5' -56.5 NC_005337.1 + 67464 0.66 0.883947
Target:  5'- cGGCGCaGCCGc--CGCUUCGUcGAGGGc -3'
miRNA:   3'- cCUGCG-CGGCcucGCGAAGCA-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 15707 0.66 0.890759
Target:  5'- cGACGUGCCGGAcgucGUGCgagcgCGcGAGGu -3'
miRNA:   3'- cCUGCGCGGCCU----CGCGaa---GCaCUUCu -5'
25660 5' -56.5 NC_005337.1 + 28500 0.66 0.890759
Target:  5'- cGGCGCGCgGucGCGCggcacugCGUGggGc -3'
miRNA:   3'- cCUGCGCGgCcuCGCGaa-----GCACuuCu -5'
25660 5' -56.5 NC_005337.1 + 123615 0.66 0.890759
Target:  5'- --cCGCGCuCGcGGGUGCUgacgcUCGUGGAGc -3'
miRNA:   3'- ccuGCGCG-GC-CUCGCGA-----AGCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 66095 0.66 0.890759
Target:  5'- cGGAgGCGCugugCGGcgucuGCGCgcgCGUGGAGu -3'
miRNA:   3'- -CCUgCGCG----GCCu----CGCGaa-GCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 56218 0.66 0.897346
Target:  5'- aGGACGUGgCGGAgggGCGgaUCGUGc--- -3'
miRNA:   3'- -CCUGCGCgGCCU---CGCgaAGCACuucu -5'
25660 5' -56.5 NC_005337.1 + 101252 0.66 0.897346
Target:  5'- --uCGCGCUGGAcgGCGCggaCGcGAAGAu -3'
miRNA:   3'- ccuGCGCGGCCU--CGCGaa-GCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 55725 0.66 0.876913
Target:  5'- cGACGCGCaCGGcGCGCc-CGUGuacGGGu -3'
miRNA:   3'- cCUGCGCG-GCCuCGCGaaGCACu--UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.