miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25660 5' -56.5 NC_005337.1 + 38475 0.7 0.699938
Target:  5'- cGGuGCGCGCCGGGcGCGCgcgUCGccGAGc -3'
miRNA:   3'- -CC-UGCGCGGCCU-CGCGa--AGCacUUCu -5'
25660 5' -56.5 NC_005337.1 + 45952 0.71 0.639201
Target:  5'- -aGCGCGCCGGAGCGCacgggcauUUCcaGGAGc -3'
miRNA:   3'- ccUGCGCGGCCUCGCG--------AAGcaCUUCu -5'
25660 5' -56.5 NC_005337.1 + 99460 0.7 0.648367
Target:  5'- uGGACGCGCgCGugcgcgaGGGCGuCUUCGUGGc-- -3'
miRNA:   3'- -CCUGCGCG-GC-------CUCGC-GAAGCACUucu -5'
25660 5' -56.5 NC_005337.1 + 32684 0.7 0.659557
Target:  5'- aGAgGCGUCGGAGCGCguagUCcaUGAAGu -3'
miRNA:   3'- cCUgCGCGGCCUCGCGa---AGc-ACUUCu -5'
25660 5' -56.5 NC_005337.1 + 20796 0.7 0.66565
Target:  5'- cGGGCGUGCCGGAGCuggacagGAAGGu -3'
miRNA:   3'- -CCUGCGCGGCCUCGcgaagcaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 98486 0.7 0.669706
Target:  5'- gGGGCGCGCCGGcGGCGUccgUCaUGAc-- -3'
miRNA:   3'- -CCUGCGCGGCC-UCGCGa--AGcACUucu -5'
25660 5' -56.5 NC_005337.1 + 43838 0.7 0.679826
Target:  5'- -aGCGgGCCGGcGGCGCg--GUGGAGAu -3'
miRNA:   3'- ccUGCgCGGCC-UCGCGaagCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 110365 0.7 0.679826
Target:  5'- cGGGCGCGCgGGcGCGCggcagCGacaggcgGAGGAg -3'
miRNA:   3'- -CCUGCGCGgCCuCGCGaa---GCa------CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 21809 0.7 0.699938
Target:  5'- cGACGCGCCGcAGCuCUUCGUGc--- -3'
miRNA:   3'- cCUGCGCGGCcUCGcGAAGCACuucu -5'
25660 5' -56.5 NC_005337.1 + 84228 0.71 0.62901
Target:  5'- cGGGCGCgGCCuGcGGGCaCUUgGUGAAGAg -3'
miRNA:   3'- -CCUGCG-CGG-C-CUCGcGAAgCACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 102999 0.71 0.62901
Target:  5'- cGGACGUGCCcGAGCGCggcccgcagGUGggGc -3'
miRNA:   3'- -CCUGCGCGGcCUCGCGaag------CACuuCu -5'
25660 5' -56.5 NC_005337.1 + 69247 0.71 0.62901
Target:  5'- uGGACGUGCCGGuGaCGCUg-GUGguGGg -3'
miRNA:   3'- -CCUGCGCGGCCuC-GCGAagCACuuCU- -5'
25660 5' -56.5 NC_005337.1 + 2686 0.78 0.272741
Target:  5'- aGGACGU-CCGGAGCuGCggCGUGggGAc -3'
miRNA:   3'- -CCUGCGcGGCCUCG-CGaaGCACuuCU- -5'
25660 5' -56.5 NC_005337.1 + 22659 0.78 0.292537
Target:  5'- cGGACGCGCggcugcgGGAGCGCUUCGcgGAcauGGAc -3'
miRNA:   3'- -CCUGCGCGg------CCUCGCGAAGCa-CU---UCU- -5'
25660 5' -56.5 NC_005337.1 + 42542 0.76 0.358571
Target:  5'- cGGACGCGCUGcGGGCGCUggugCGgcugcggcUGGAGGc -3'
miRNA:   3'- -CCUGCGCGGC-CUCGCGAa---GC--------ACUUCU- -5'
25660 5' -56.5 NC_005337.1 + 55360 0.76 0.374594
Target:  5'- -cGCGCGCUcuucgaGGAGCGCUcCGUGAAGu -3'
miRNA:   3'- ccUGCGCGG------CCUCGCGAaGCACUUCu -5'
25660 5' -56.5 NC_005337.1 + 31765 0.75 0.425481
Target:  5'- cGugGCGUCGGAGCuGCU-CGgGAGGAg -3'
miRNA:   3'- cCugCGCGGCCUCG-CGAaGCaCUUCU- -5'
25660 5' -56.5 NC_005337.1 + 64273 0.74 0.443337
Target:  5'- cGGGCGCGCCGGAGCaacuGCUcuUCGaccgucUGAGcGAg -3'
miRNA:   3'- -CCUGCGCGGCCUCG----CGA--AGC------ACUU-CU- -5'
25660 5' -56.5 NC_005337.1 + 95348 0.74 0.461607
Target:  5'- ---aGCGCCGGAGCGCcgagUCGccGAAGGc -3'
miRNA:   3'- ccugCGCGGCCUCGCGa---AGCa-CUUCU- -5'
25660 5' -56.5 NC_005337.1 + 88336 0.71 0.608644
Target:  5'- -cGCGCGCCGGcGCGCg-CGaGAAGAc -3'
miRNA:   3'- ccUGCGCGGCCuCGCGaaGCaCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.