miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25661 3' -56 NC_005337.1 + 59183 0.67 0.825459
Target:  5'- cCGUGCgucggggcaccgGCGACGgcUGGaugGUGCAgaaggCCGCGg -3'
miRNA:   3'- -GCACG------------UGCUGC--ACCa--CACGUa----GGCGU- -5'
25661 3' -56 NC_005337.1 + 61216 0.68 0.816842
Target:  5'- gGUGCACGACgGUGGcGaUGgAcagCCGCAg -3'
miRNA:   3'- gCACGUGCUG-CACCaC-ACgUa--GGCGU- -5'
25661 3' -56 NC_005337.1 + 6215 0.68 0.808054
Target:  5'- -cUGCAUGugGUGGUGcagcaGCGUguccCCGCGc -3'
miRNA:   3'- gcACGUGCugCACCACa----CGUA----GGCGU- -5'
25661 3' -56 NC_005337.1 + 122668 0.68 0.799105
Target:  5'- --cGCugGACGaggaccUGGUGcUGCA-CCGCAu -3'
miRNA:   3'- gcaCGugCUGC------ACCAC-ACGUaGGCGU- -5'
25661 3' -56 NC_005337.1 + 103897 0.68 0.799105
Target:  5'- cCGcGCGCGACaUGGacGUGC-UCCGCGu -3'
miRNA:   3'- -GCaCGUGCUGcACCa-CACGuAGGCGU- -5'
25661 3' -56 NC_005337.1 + 80273 0.68 0.799105
Target:  5'- gCGUGCGCGACGcGGUG---AUCCGg- -3'
miRNA:   3'- -GCACGUGCUGCaCCACacgUAGGCgu -5'
25661 3' -56 NC_005337.1 + 113163 0.68 0.799105
Target:  5'- gGUGCGCuGCGUGGcGgccgGCGUcCCGUAc -3'
miRNA:   3'- gCACGUGcUGCACCaCa---CGUA-GGCGU- -5'
25661 3' -56 NC_005337.1 + 86416 0.68 0.790004
Target:  5'- cCG-GCGCGAUGUGGaUG-GCGUCCuCGg -3'
miRNA:   3'- -GCaCGUGCUGCACC-ACaCGUAGGcGU- -5'
25661 3' -56 NC_005337.1 + 117538 0.68 0.780758
Target:  5'- gGUGCAcguCGACGUcgGGUGUGCcgUCGa- -3'
miRNA:   3'- gCACGU---GCUGCA--CCACACGuaGGCgu -5'
25661 3' -56 NC_005337.1 + 69082 0.69 0.765688
Target:  5'- gGUGCACGAgcacgagcucuaccuCGUGGUGcaccuCGUCUGCGg -3'
miRNA:   3'- gCACGUGCU---------------GCACCACac---GUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 50238 0.69 0.761871
Target:  5'- uCGUGCGCGccucCGccGGUGUGUcccgCCGCAg -3'
miRNA:   3'- -GCACGUGCu---GCa-CCACACGua--GGCGU- -5'
25661 3' -56 NC_005337.1 + 49454 0.69 0.761871
Target:  5'- gCGUGCGCGAUGcUGGcGuUGCuggCCGCc -3'
miRNA:   3'- -GCACGUGCUGC-ACCaC-ACGua-GGCGu -5'
25661 3' -56 NC_005337.1 + 97807 0.69 0.75128
Target:  5'- cCGUGCGgcAgGUGGUgaagaccGUGCGUCCGCc -3'
miRNA:   3'- -GCACGUgcUgCACCA-------CACGUAGGCGu -5'
25661 3' -56 NC_005337.1 + 70360 0.69 0.742518
Target:  5'- gGUGCGCcgccgcACGUGGUc-GCGUCCGUAg -3'
miRNA:   3'- gCACGUGc-----UGCACCAcaCGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 55169 0.69 0.732691
Target:  5'- uCGUGCgcgucgACGACGUgccGGUGgGCAUgCGCGu -3'
miRNA:   3'- -GCACG------UGCUGCA---CCACaCGUAgGCGU- -5'
25661 3' -56 NC_005337.1 + 134251 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 133893 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134015 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 134251 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5'
25661 3' -56 NC_005337.1 + 133954 0.7 0.71278
Target:  5'- cCGUGCGuc-CGUGcGUccGUGCGUCCGCAc -3'
miRNA:   3'- -GCACGUgcuGCAC-CA--CACGUAGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.