miRNA display CGI


Results 21 - 40 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25661 5' -58.1 NC_005337.1 + 81264 0.66 0.822532
Target:  5'- aGCCGcAGGuucAUGCCGccgCUACAggagcaCGCGCCu -3'
miRNA:   3'- -UGGC-UCC---UGCGGUa--GGUGUa-----GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 124710 0.66 0.822532
Target:  5'- -aCGAGGACcaGCUccgGUUCAgCGUCGUGCUg -3'
miRNA:   3'- ugGCUCCUG--CGG---UAGGU-GUAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 92769 0.66 0.822532
Target:  5'- gGCCGcgcGGAUGCgcUCCAUcgCGgGCCc -3'
miRNA:   3'- -UGGCu--CCUGCGguAGGUGuaGCgCGG- -5'
25661 5' -58.1 NC_005337.1 + 64687 0.66 0.822532
Target:  5'- gACCGAGca-GUCcUCCuCGUCGCGCa -3'
miRNA:   3'- -UGGCUCcugCGGuAGGuGUAGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 14931 0.66 0.822532
Target:  5'- cUCGuGGugGCCgcuguGUCCAcCGUCGcCGCg -3'
miRNA:   3'- uGGCuCCugCGG-----UAGGU-GUAGC-GCGg -5'
25661 5' -58.1 NC_005337.1 + 64158 0.66 0.819996
Target:  5'- -aCGAGGuuucccaggccaccACGCUGgcgCCGCaAUCGCGCUc -3'
miRNA:   3'- ugGCUCC--------------UGCGGUa--GGUG-UAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 34858 0.66 0.817445
Target:  5'- uGCgGcGGcGCGCCAUCCuccgacgugaacucuACGagCGCGCCg -3'
miRNA:   3'- -UGgCuCC-UGCGGUAGG---------------UGUa-GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 33611 0.66 0.815736
Target:  5'- cACCGucgcGGACGCCGgguccuucaggcCCACGuauauccgaugcuccUCGCGCg -3'
miRNA:   3'- -UGGCu---CCUGCGGUa-----------GGUGU---------------AGCGCGg -5'
25661 5' -58.1 NC_005337.1 + 67981 0.66 0.81402
Target:  5'- uACCGGaacgucacguuGGugGUCugGUCCACGguguugUCGCGCUu -3'
miRNA:   3'- -UGGCU-----------CCugCGG--UAGGUGU------AGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 78765 0.66 0.81402
Target:  5'- -gCGAGGGCuGCCGgccgaagaUCACGUuCGUGCCc -3'
miRNA:   3'- ugGCUCCUG-CGGUa-------GGUGUA-GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 28732 0.66 0.81402
Target:  5'- -aUGGGuGGCGCCAccguUCCA-GUCGCGUCc -3'
miRNA:   3'- ugGCUC-CUGCGGU----AGGUgUAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 10247 0.66 0.81402
Target:  5'- cUUGcAGGugGCCAgCCACAUCaGCaGCUc -3'
miRNA:   3'- uGGC-UCCugCGGUaGGUGUAG-CG-CGG- -5'
25661 5' -58.1 NC_005337.1 + 82158 0.66 0.81402
Target:  5'- cACgGuGGcggccACGuCCGUCCcgGUCGCGCCg -3'
miRNA:   3'- -UGgCuCC-----UGC-GGUAGGugUAGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 100548 0.66 0.81402
Target:  5'- -aCGGGGugcuGCGCgA-CCGCAUCcucgGCGCCa -3'
miRNA:   3'- ugGCUCC----UGCGgUaGGUGUAG----CGCGG- -5'
25661 5' -58.1 NC_005337.1 + 44624 0.66 0.81402
Target:  5'- aACCuGAaGGCGCUGcUCCugAUCguGCGCCg -3'
miRNA:   3'- -UGG-CUcCUGCGGU-AGGugUAG--CGCGG- -5'
25661 5' -58.1 NC_005337.1 + 131653 0.66 0.81402
Target:  5'- uUCGAGGAgcCCGUgCGCGcCGCGCUg -3'
miRNA:   3'- uGGCUCCUgcGGUAgGUGUaGCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 100586 0.66 0.81402
Target:  5'- uUCGAGGaggugGCGCCcgCCGgCcUCGgCGCCu -3'
miRNA:   3'- uGGCUCC-----UGCGGuaGGU-GuAGC-GCGG- -5'
25661 5' -58.1 NC_005337.1 + 58810 0.66 0.81316
Target:  5'- -aCGAGGccucgcuGCGCCAgaUCguCGggCGCGCCg -3'
miRNA:   3'- ugGCUCC-------UGCGGU--AGguGUa-GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 69742 0.66 0.808835
Target:  5'- uGCCGuccuugacgagcuccAGGACgGCCGUggCCAUGUaCGCGCUc -3'
miRNA:   3'- -UGGC---------------UCCUG-CGGUA--GGUGUA-GCGCGG- -5'
25661 5' -58.1 NC_005337.1 + 48293 0.66 0.805347
Target:  5'- cCCGcGGucGCGCC-UCCGCAUgcggugcgcgggCGCGCUg -3'
miRNA:   3'- uGGCuCC--UGCGGuAGGUGUA------------GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.