miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25662 3' -51.3 NC_005337.1 + 64445 0.66 0.985788
Target:  5'- gGCGCugAUCugcGCCUcuguccggcagacggCCGAGAccgUGggGCa -3'
miRNA:   3'- -UGCGugUAG---UGGA---------------GGUUCU---ACuuCGa -5'
25662 3' -51.3 NC_005337.1 + 55171 0.66 0.985065
Target:  5'- uCGUACAUCAUCUCCGGcaa-GAGCa -3'
miRNA:   3'- uGCGUGUAGUGGAGGUUcuacUUCGa -5'
25662 3' -51.3 NC_005337.1 + 43965 0.66 0.985065
Target:  5'- gACGCACugcuguUUACCUCCAccgaccgcauGGA-GAAGUUc -3'
miRNA:   3'- -UGCGUGu-----AGUGGAGGU----------UCUaCUUCGA- -5'
25662 3' -51.3 NC_005337.1 + 121562 0.66 0.985065
Target:  5'- gGCGUACGUCGCCUUCGcc---GAGCa -3'
miRNA:   3'- -UGCGUGUAGUGGAGGUucuacUUCGa -5'
25662 3' -51.3 NC_005337.1 + 127808 0.66 0.985065
Target:  5'- cGCGCugGUCACCgccaCCAAcugGggGUUc -3'
miRNA:   3'- -UGCGugUAGUGGa---GGUUcuaCuuCGA- -5'
25662 3' -51.3 NC_005337.1 + 567 0.66 0.983136
Target:  5'- cCGCGCGUaCGCCgcggCCGcGcgGAAGCc -3'
miRNA:   3'- uGCGUGUA-GUGGa---GGUuCuaCUUCGa -5'
25662 3' -51.3 NC_005337.1 + 56669 0.66 0.983136
Target:  5'- uACGagaGCAUgACCUCCGAGuccaaGAGCa -3'
miRNA:   3'- -UGCg--UGUAgUGGAGGUUCuac--UUCGa -5'
25662 3' -51.3 NC_005337.1 + 66416 0.66 0.983136
Target:  5'- -gGCGCAUCuuCCUCCGGGAcGAcGUc -3'
miRNA:   3'- ugCGUGUAGu-GGAGGUUCUaCUuCGa -5'
25662 3' -51.3 NC_005337.1 + 567 0.66 0.983136
Target:  5'- cCGCGCGUaCGCCgcggCCGcGcgGAAGCc -3'
miRNA:   3'- uGCGUGUA-GUGGa---GGUuCuaCUUCGa -5'
25662 3' -51.3 NC_005337.1 + 3315 0.66 0.982933
Target:  5'- uGCGCACGUCcacggccacgccgGCgUCCAGGAac-GGCUg -3'
miRNA:   3'- -UGCGUGUAG-------------UGgAGGUUCUacuUCGA- -5'
25662 3' -51.3 NC_005337.1 + 69005 0.66 0.981024
Target:  5'- cCGCGCgAUCGCCgccgCCGugucccGGAUGAcuGGCg -3'
miRNA:   3'- uGCGUG-UAGUGGa---GGU------UCUACU--UCGa -5'
25662 3' -51.3 NC_005337.1 + 6424 0.66 0.981024
Target:  5'- cACGCACAgcagCgcgGCCUCCGAGuccggGAAGa- -3'
miRNA:   3'- -UGCGUGUa---G---UGGAGGUUCua---CUUCga -5'
25662 3' -51.3 NC_005337.1 + 46638 0.66 0.981024
Target:  5'- cCGCACca-ACCUCCGcGAgucGggGCUg -3'
miRNA:   3'- uGCGUGuagUGGAGGUuCUa--CuuCGA- -5'
25662 3' -51.3 NC_005337.1 + 79439 0.66 0.978721
Target:  5'- gGCGCGCGugcauguucuUCACCauguaCCc-GAUGAAGCUg -3'
miRNA:   3'- -UGCGUGU----------AGUGGa----GGuuCUACUUCGA- -5'
25662 3' -51.3 NC_005337.1 + 120637 0.66 0.978721
Target:  5'- cCGCGCGUCcuGCUUCC-AGAcGAGGUg -3'
miRNA:   3'- uGCGUGUAG--UGGAGGuUCUaCUUCGa -5'
25662 3' -51.3 NC_005337.1 + 34822 0.66 0.978721
Target:  5'- cGCGCACGcgCGCgUCCAcgAGGUGGcccacgccgcGGCUc -3'
miRNA:   3'- -UGCGUGUa-GUGgAGGU--UCUACU----------UCGA- -5'
25662 3' -51.3 NC_005337.1 + 13609 0.66 0.978721
Target:  5'- cACGUGCGUCAggUCCcGGGUGAagAGCa -3'
miRNA:   3'- -UGCGUGUAGUggAGGuUCUACU--UCGa -5'
25662 3' -51.3 NC_005337.1 + 120697 0.66 0.976216
Target:  5'- gACGCGaacucgucCGUgAUCUUCAAGGUGGAGUUc -3'
miRNA:   3'- -UGCGU--------GUAgUGGAGGUUCUACUUCGA- -5'
25662 3' -51.3 NC_005337.1 + 57477 0.66 0.976216
Target:  5'- aGCGCGCG-CACCUCacuGAGGUGcuGGUg -3'
miRNA:   3'- -UGCGUGUaGUGGAGg--UUCUACu-UCGa -5'
25662 3' -51.3 NC_005337.1 + 104073 0.66 0.976216
Target:  5'- cGCGC-CAUCGaccCCUCCAacgugaacgAGAUGAuccccaAGCUg -3'
miRNA:   3'- -UGCGuGUAGU---GGAGGU---------UCUACU------UCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.