miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25662 3' -51.3 NC_005337.1 + 46952 1.08 0.006614
Target:  5'- cACGCACAUCACCUCCAAGAUGAAGCUg -3'
miRNA:   3'- -UGCGUGUAGUGGAGGUUCUACUUCGA- -5'
25662 3' -51.3 NC_005337.1 + 80525 0.75 0.653381
Target:  5'- gACGCGCAgcugCAUCUCCGGGcgGAAGa- -3'
miRNA:   3'- -UGCGUGUa---GUGGAGGUUCuaCUUCga -5'
25662 3' -51.3 NC_005337.1 + 112360 0.75 0.653381
Target:  5'- aGCGCGCGgcCACCUCCA---UGAAGCg -3'
miRNA:   3'- -UGCGUGUa-GUGGAGGUucuACUUCGa -5'
25662 3' -51.3 NC_005337.1 + 11744 0.74 0.68556
Target:  5'- aGCGCGCGUCGCCgcgCCAGGGcc-AGCa -3'
miRNA:   3'- -UGCGUGUAGUGGa--GGUUCUacuUCGa -5'
25662 3' -51.3 NC_005337.1 + 131752 0.74 0.696201
Target:  5'- cCGgACGUCcggGCCUCCGAGGUGcGGCa -3'
miRNA:   3'- uGCgUGUAG---UGGAGGUUCUACuUCGa -5'
25662 3' -51.3 NC_005337.1 + 116159 0.74 0.696201
Target:  5'- aGCGCAcCAUCGaguCCUCCAAGGUGu-GCa -3'
miRNA:   3'- -UGCGU-GUAGU---GGAGGUUCUACuuCGa -5'
25662 3' -51.3 NC_005337.1 + 117633 0.74 0.717295
Target:  5'- cCGcCGCGUCACCgCCGuGGUGGAGCg -3'
miRNA:   3'- uGC-GUGUAGUGGaGGUuCUACUUCGa -5'
25662 3' -51.3 NC_005337.1 + 57449 0.73 0.726687
Target:  5'- gGCGCACcgCGagcaugcCCUCCGAGAUGcaGGGCg -3'
miRNA:   3'- -UGCGUGuaGU-------GGAGGUUCUAC--UUCGa -5'
25662 3' -51.3 NC_005337.1 + 32821 0.73 0.768425
Target:  5'- cACGCACucgCGCCccUCCucGGUGGAGCg -3'
miRNA:   3'- -UGCGUGua-GUGG--AGGuuCUACUUCGa -5'
25662 3' -51.3 NC_005337.1 + 80645 0.73 0.768425
Target:  5'- gGCGCACu---CCUCCucGGUGggGCg -3'
miRNA:   3'- -UGCGUGuaguGGAGGuuCUACuuCGa -5'
25662 3' -51.3 NC_005337.1 + 31510 0.73 0.768425
Target:  5'- gACGCGC-UCgACCUCCGgguGGAUGGugGGCUg -3'
miRNA:   3'- -UGCGUGuAG-UGGAGGU---UCUACU--UCGA- -5'
25662 3' -51.3 NC_005337.1 + 12514 0.72 0.77829
Target:  5'- aGC-CGCGUgACCUCCGGGuucaccGUGAAGCUg -3'
miRNA:   3'- -UGcGUGUAgUGGAGGUUC------UACUUCGA- -5'
25662 3' -51.3 NC_005337.1 + 2392 0.72 0.788009
Target:  5'- uGCGCGCc-CGCCUCCAGGAgGcAGCg -3'
miRNA:   3'- -UGCGUGuaGUGGAGGUUCUaCuUCGa -5'
25662 3' -51.3 NC_005337.1 + 69003 0.72 0.788009
Target:  5'- aGCGC-CGUCACCgugaaCAGGAUGAAGg- -3'
miRNA:   3'- -UGCGuGUAGUGGag---GUUCUACUUCga -5'
25662 3' -51.3 NC_005337.1 + 72881 0.72 0.788009
Target:  5'- gACGUGCA-CGCCUCCGcGAcGGAGCUc -3'
miRNA:   3'- -UGCGUGUaGUGGAGGUuCUaCUUCGA- -5'
25662 3' -51.3 NC_005337.1 + 87275 0.72 0.80697
Target:  5'- uUGUugGUCGCgguCUCCAcgaAGAUGAAGCUc -3'
miRNA:   3'- uGCGugUAGUG---GAGGU---UCUACUUCGA- -5'
25662 3' -51.3 NC_005337.1 + 54602 0.72 0.81068
Target:  5'- uCGUACAUCgugcgacccgaguacAUCUCCGAGGUGAugcGGCUg -3'
miRNA:   3'- uGCGUGUAG---------------UGGAGGUUCUACU---UCGA- -5'
25662 3' -51.3 NC_005337.1 + 45499 0.71 0.825226
Target:  5'- gACGCACGUCgaagGCCUCCAcgucGGUGucGGCg -3'
miRNA:   3'- -UGCGUGUAG----UGGAGGUu---CUACu-UCGa -5'
25662 3' -51.3 NC_005337.1 + 89495 0.71 0.828786
Target:  5'- uGCGCACGUCgcgcaaaaccACCUUCAGccgcuccugucugauGAUGAGGCg -3'
miRNA:   3'- -UGCGUGUAG----------UGGAGGUU---------------CUACUUCGa -5'
25662 3' -51.3 NC_005337.1 + 104262 0.71 0.834067
Target:  5'- cGCGUACGUCGCCgaCGAGAccGAGCUg -3'
miRNA:   3'- -UGCGUGUAGUGGagGUUCUacUUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.