miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25662 3' -51.3 NC_005337.1 + 567 0.66 0.983136
Target:  5'- cCGCGCGUaCGCCgcggCCGcGcgGAAGCc -3'
miRNA:   3'- uGCGUGUA-GUGGa---GGUuCuaCUUCGa -5'
25662 3' -51.3 NC_005337.1 + 567 0.66 0.983136
Target:  5'- cCGCGCGUaCGCCgcggCCGcGcgGAAGCc -3'
miRNA:   3'- uGCGUGUA-GUGGa---GGUuCuaCUUCGa -5'
25662 3' -51.3 NC_005337.1 + 2392 0.72 0.788009
Target:  5'- uGCGCGCc-CGCCUCCAGGAgGcAGCg -3'
miRNA:   3'- -UGCGUGuaGUGGAGGUUCUaCuUCGa -5'
25662 3' -51.3 NC_005337.1 + 3212 0.67 0.970572
Target:  5'- cGCGCuCGUCGcCCUUgAGGuUGGAGCg -3'
miRNA:   3'- -UGCGuGUAGU-GGAGgUUCuACUUCGa -5'
25662 3' -51.3 NC_005337.1 + 3315 0.66 0.982933
Target:  5'- uGCGCACGUCcacggccacgccgGCgUCCAGGAac-GGCUg -3'
miRNA:   3'- -UGCGUGUAG-------------UGgAGGUUCUacuUCGA- -5'
25662 3' -51.3 NC_005337.1 + 4058 0.67 0.97322
Target:  5'- cGCGCAgucuggcgaucucCGucUCGCaCUCCAGGAUG-AGCUc -3'
miRNA:   3'- -UGCGU-------------GU--AGUG-GAGGUUCUACuUCGA- -5'
25662 3' -51.3 NC_005337.1 + 6424 0.66 0.981024
Target:  5'- cACGCACAgcagCgcgGCCUCCGAGuccggGAAGa- -3'
miRNA:   3'- -UGCGUGUa---G---UGGAGGUUCua---CUUCga -5'
25662 3' -51.3 NC_005337.1 + 7479 0.67 0.964026
Target:  5'- gGCGCGCAcgACgUCCAGGuccacGggGCUg -3'
miRNA:   3'- -UGCGUGUagUGgAGGUUCua---CuuCGA- -5'
25662 3' -51.3 NC_005337.1 + 9496 0.68 0.951115
Target:  5'- uGCGCGCAgagcucgauggccgUCACCaugcggCCGGGG-GAGGCUg -3'
miRNA:   3'- -UGCGUGU--------------AGUGGa-----GGUUCUaCUUCGA- -5'
25662 3' -51.3 NC_005337.1 + 10245 0.66 0.975691
Target:  5'- gGCGCGCGgccuucgcggggCGCCUCCAucGGcgGcGGCg -3'
miRNA:   3'- -UGCGUGUa-----------GUGGAGGU--UCuaCuUCGa -5'
25662 3' -51.3 NC_005337.1 + 11744 0.74 0.68556
Target:  5'- aGCGCGCGUCGCCgcgCCAGGGcc-AGCa -3'
miRNA:   3'- -UGCGUGUAGUGGa--GGUUCUacuUCGa -5'
25662 3' -51.3 NC_005337.1 + 12514 0.72 0.77829
Target:  5'- aGC-CGCGUgACCUCCGGGuucaccGUGAAGCUg -3'
miRNA:   3'- -UGcGUGUAgUGGAGGUUC------UACUUCGA- -5'
25662 3' -51.3 NC_005337.1 + 13609 0.66 0.978721
Target:  5'- cACGUGCGUCAggUCCcGGGUGAagAGCa -3'
miRNA:   3'- -UGCGUGUAGUggAGGuUCUACU--UCGa -5'
25662 3' -51.3 NC_005337.1 + 16695 0.71 0.851127
Target:  5'- cGCGCACGgcgGCCUCCGcugccGGGUGAcGCg -3'
miRNA:   3'- -UGCGUGUag-UGGAGGU-----UCUACUuCGa -5'
25662 3' -51.3 NC_005337.1 + 18607 0.67 0.960398
Target:  5'- uGCGCGCGgagUAUCUgCAGGAUGAcGUUg -3'
miRNA:   3'- -UGCGUGUa--GUGGAgGUUCUACUuCGA- -5'
25662 3' -51.3 NC_005337.1 + 23232 0.7 0.882545
Target:  5'- cCGcCGCGUCAuCCUCCAGGG-GAGGUc -3'
miRNA:   3'- uGC-GUGUAGU-GGAGGUUCUaCUUCGa -5'
25662 3' -51.3 NC_005337.1 + 24193 0.71 0.839274
Target:  5'- cGCGC-CGUUACCggcgaggcgcgcgUCGAGGUGGAGCUg -3'
miRNA:   3'- -UGCGuGUAGUGGa------------GGUUCUACUUCGA- -5'
25662 3' -51.3 NC_005337.1 + 25964 0.67 0.973503
Target:  5'- uCGC-CcgCGCgUCCAGGAaGGAGCg -3'
miRNA:   3'- uGCGuGuaGUGgAGGUUCUaCUUCGa -5'
25662 3' -51.3 NC_005337.1 + 28608 0.71 0.842703
Target:  5'- gUGCACGagCuCCUCCAGGAUGGugAGCa -3'
miRNA:   3'- uGCGUGUa-GuGGAGGUUCUACU--UCGa -5'
25662 3' -51.3 NC_005337.1 + 29483 0.69 0.933327
Target:  5'- uCGCGCAggAUCUCCGAGAcggUGAAGg- -3'
miRNA:   3'- uGCGUGUagUGGAGGUUCU---ACUUCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.