miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25662 5' -53.1 NC_005337.1 + 75423 0.68 0.905168
Target:  5'- gCGGGCgUCAUC-UCGUGGcuguuGAgCCGCa -3'
miRNA:   3'- -GCUCGaAGUAGaAGCACCu----CU-GGCGc -5'
25662 5' -53.1 NC_005337.1 + 81012 0.67 0.938777
Target:  5'- uCGGGCgcgcgaaGUCcgggCGUGGAGAUgGCGg -3'
miRNA:   3'- -GCUCGaag----UAGaa--GCACCUCUGgCGC- -5'
25662 5' -53.1 NC_005337.1 + 82386 0.69 0.885051
Target:  5'- aGGGCcUCGUCgUCGgGGAGccCCGCGa -3'
miRNA:   3'- gCUCGaAGUAGaAGCaCCUCu-GGCGC- -5'
25662 5' -53.1 NC_005337.1 + 83541 0.67 0.952243
Target:  5'- aCGAGCaUCGUC-UCGUcGcGGGACgGCa -3'
miRNA:   3'- -GCUCGaAGUAGaAGCA-C-CUCUGgCGc -5'
25662 5' -53.1 NC_005337.1 + 92593 0.66 0.966877
Target:  5'- aCGuGCUUCGaCgaCGUGGAcGuCCGCGc -3'
miRNA:   3'- -GCuCGAAGUaGaaGCACCU-CuGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 93096 0.77 0.471632
Target:  5'- gGAGC-UCAUCgaCGUGGAGAUCGgGg -3'
miRNA:   3'- gCUCGaAGUAGaaGCACCUCUGGCgC- -5'
25662 5' -53.1 NC_005337.1 + 97257 0.68 0.926951
Target:  5'- aGAGCaUCcUCUUcgaccccacgucccCGcggcUGGAGACCGCGg -3'
miRNA:   3'- gCUCGaAGuAGAA--------------GC----ACCUCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 103473 0.69 0.885051
Target:  5'- --cGCUUCAccgaggccgaccUCUUCGUGGAcGCCGUc -3'
miRNA:   3'- gcuCGAAGU------------AGAAGCACCUcUGGCGc -5'
25662 5' -53.1 NC_005337.1 + 110247 0.66 0.969973
Target:  5'- cCGGGCgUgAUCUUCGUGGuuacGGACaUGCc -3'
miRNA:   3'- -GCUCGaAgUAGAAGCACC----UCUG-GCGc -5'
25662 5' -53.1 NC_005337.1 + 110579 0.69 0.885051
Target:  5'- gCGAGCcgCGUCUUCauGUGcGAGaACUGCGc -3'
miRNA:   3'- -GCUCGaaGUAGAAG--CAC-CUC-UGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 114889 0.73 0.716687
Target:  5'- -cGGCccCAUCUUCGUGGAaGCCGCc -3'
miRNA:   3'- gcUCGaaGUAGAAGCACCUcUGGCGc -5'
25662 5' -53.1 NC_005337.1 + 120142 0.68 0.917364
Target:  5'- aCGAGCUcgcggacuUCGUCcgCGUGGccACCGCc -3'
miRNA:   3'- -GCUCGA--------AGUAGaaGCACCucUGGCGc -5'
25662 5' -53.1 NC_005337.1 + 122050 0.66 0.966877
Target:  5'- cCGAGUg-CcgCgUCGUGGAGAcgcugcCCGCGg -3'
miRNA:   3'- -GCUCGaaGuaGaAGCACCUCU------GGCGC- -5'
25662 5' -53.1 NC_005337.1 + 127831 0.67 0.952243
Target:  5'- gGGGgUUCuUCUUCccggacucGGAGGCCGCGc -3'
miRNA:   3'- gCUCgAAGuAGAAGca------CCUCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 131434 0.67 0.94351
Target:  5'- gCGGaCUcCGUCUcCGcGGAGGCCGCGc -3'
miRNA:   3'- -GCUcGAaGUAGAaGCaCCUCUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.