miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25662 5' -53.1 NC_005337.1 + 55022 0.66 0.963561
Target:  5'- aGGGCgacuUCGUgcuggcCUUCGUGGAGcgGCUGCu -3'
miRNA:   3'- gCUCGa---AGUA------GAAGCACCUC--UGGCGc -5'
25662 5' -53.1 NC_005337.1 + 122050 0.66 0.966877
Target:  5'- cCGAGUg-CcgCgUCGUGGAGAcgcugcCCGCGg -3'
miRNA:   3'- -GCUCGaaGuaGaAGCACCUCU------GGCGC- -5'
25662 5' -53.1 NC_005337.1 + 92593 0.66 0.966877
Target:  5'- aCGuGCUUCGaCgaCGUGGAcGuCCGCGc -3'
miRNA:   3'- -GCuCGAAGUaGaaGCACCU-CuGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 66930 0.66 0.969973
Target:  5'- uGGGCUgCGcCaUCGUGGAGGgCGUGu -3'
miRNA:   3'- gCUCGAaGUaGaAGCACCUCUgGCGC- -5'
25662 5' -53.1 NC_005337.1 + 60974 0.67 0.933797
Target:  5'- aGAGCUUCuUCacgUCGaaGGGGAgCGCGu -3'
miRNA:   3'- gCUCGAAGuAGa--AGCa-CCUCUgGCGC- -5'
25662 5' -53.1 NC_005337.1 + 66329 0.67 0.933285
Target:  5'- gCGGGCUggcgacaCGUgcUCGUGGAGcgcgaccACCGCGg -3'
miRNA:   3'- -GCUCGAa------GUAgaAGCACCUC-------UGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 46989 1.1 0.004178
Target:  5'- aCGAGCUUCAUCUUCGUGGAGACCGCGa -3'
miRNA:   3'- -GCUCGAAGUAGAAGCACCUCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 114889 0.73 0.716687
Target:  5'- -cGGCccCAUCUUCGUGGAaGCCGCc -3'
miRNA:   3'- gcUCGaaGUAGAAGCACCUcUGGCGc -5'
25662 5' -53.1 NC_005337.1 + 66760 0.71 0.802863
Target:  5'- uGAGC-UCGaagaaguUCUUgGUGGAgGGCCGCGu -3'
miRNA:   3'- gCUCGaAGU-------AGAAgCACCU-CUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 72222 0.71 0.803772
Target:  5'- cCGGGCaUCGUCga-GUGGGGGCgCGCc -3'
miRNA:   3'- -GCUCGaAGUAGaagCACCUCUG-GCGc -5'
25662 5' -53.1 NC_005337.1 + 82386 0.69 0.885051
Target:  5'- aGGGCcUCGUCgUCGgGGAGccCCGCGa -3'
miRNA:   3'- gCUCGaAGUAGaAGCaCCUCu-GGCGC- -5'
25662 5' -53.1 NC_005337.1 + 103473 0.69 0.885051
Target:  5'- --cGCUUCAccgaggccgaccUCUUCGUGGAcGCCGUc -3'
miRNA:   3'- gcuCGAAGU------------AGAAGCACCUcUGGCGc -5'
25662 5' -53.1 NC_005337.1 + 120142 0.68 0.917364
Target:  5'- aCGAGCUcgcggacuUCGUCcgCGUGGccACCGCc -3'
miRNA:   3'- -GCUCGA--------AGUAGaaGCACCucUGGCGc -5'
25662 5' -53.1 NC_005337.1 + 97257 0.68 0.926951
Target:  5'- aGAGCaUCcUCUUcgaccccacgucccCGcggcUGGAGACCGCGg -3'
miRNA:   3'- gCUCGaAGuAGAA--------------GC----ACCUCUGGCGC- -5'
25662 5' -53.1 NC_005337.1 + 110247 0.66 0.969973
Target:  5'- cCGGGCgUgAUCUUCGUGGuuacGGACaUGCc -3'
miRNA:   3'- -GCUCGaAgUAGAAGCACC----UCUG-GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.