miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25664 3' -58.4 NC_005337.1 + 41497 0.66 0.749856
Target:  5'- gGAGGGGCCC-GCGAUggagCgCAUCCg--- -3'
miRNA:   3'- -CUCCUCGGGuCGCUGa---G-GUAGGacuu -5'
25664 3' -58.4 NC_005337.1 + 52528 0.66 0.740052
Target:  5'- cAGGAGaacggcgCCGGCGGCgacagCCAgagCCUGAAc -3'
miRNA:   3'- cUCCUCg------GGUCGCUGa----GGUa--GGACUU- -5'
25664 3' -58.4 NC_005337.1 + 123640 0.66 0.710101
Target:  5'- -uGGAGCUcugCAGCGGCgcgacggUCGUCCUGGc -3'
miRNA:   3'- cuCCUCGG---GUCGCUGa------GGUAGGACUu -5'
25664 3' -58.4 NC_005337.1 + 34394 0.67 0.690801
Target:  5'- aGAGGAGCgUGGCGguGCUCCAgggcaggcccgaccgCCUGGc -3'
miRNA:   3'- -CUCCUCGgGUCGC--UGAGGUa--------------GGACUu -5'
25664 3' -58.4 NC_005337.1 + 66324 0.67 0.679541
Target:  5'- cAGcGAGCCCaucgucuucGGCGACggggCCAccuUCCUGGAg -3'
miRNA:   3'- cUC-CUCGGG---------UCGCUGa---GGU---AGGACUU- -5'
25664 3' -58.4 NC_005337.1 + 36637 0.67 0.679541
Target:  5'- --cGAGCgCAGCGACUCCcacucGUCCcgGAAg -3'
miRNA:   3'- cucCUCGgGUCGCUGAGG-----UAGGa-CUU- -5'
25664 3' -58.4 NC_005337.1 + 98485 0.67 0.669262
Target:  5'- aGGGGcGCgCCGGCGGCgUCCGUCaUGAc -3'
miRNA:   3'- -CUCCuCG-GGUCGCUG-AGGUAGgACUu -5'
25664 3' -58.4 NC_005337.1 + 119356 0.67 0.658953
Target:  5'- -uGGcucCCCAGCGGCagCAUCCUGGGa -3'
miRNA:   3'- cuCCuc-GGGUCGCUGagGUAGGACUU- -5'
25664 3' -58.4 NC_005337.1 + 55122 0.69 0.586638
Target:  5'- gGAGGuGCCCucguccGGCGugguCUCCAUCCaGGAc -3'
miRNA:   3'- -CUCCuCGGG------UCGCu---GAGGUAGGaCUU- -5'
25664 3' -58.4 NC_005337.1 + 46699 0.69 0.566166
Target:  5'- cGGGAGgUCGGCGACUUcgaCAUCCUGc- -3'
miRNA:   3'- cUCCUCgGGUCGCUGAG---GUAGGACuu -5'
25664 3' -58.4 NC_005337.1 + 44521 0.7 0.524843
Target:  5'- cGGGGuGCCCAucuCGgacgaggucaagaACUCCAUCCUGGAg -3'
miRNA:   3'- -CUCCuCGGGUc--GC-------------UGAGGUAGGACUU- -5'
25664 3' -58.4 NC_005337.1 + 100256 0.71 0.458175
Target:  5'- gGAGGGcGCCgAGCGgguGCUCC-UCCUGAc -3'
miRNA:   3'- -CUCCU-CGGgUCGC---UGAGGuAGGACUu -5'
25664 3' -58.4 NC_005337.1 + 56703 0.73 0.338534
Target:  5'- cAGGuGgUCAGCGGCUCCGugcUCCUGAAg -3'
miRNA:   3'- cUCCuCgGGUCGCUGAGGU---AGGACUU- -5'
25664 3' -58.4 NC_005337.1 + 46533 1.06 0.001861
Target:  5'- cGAGGAGCCCAGCGACUCCAUCCUGAAg -3'
miRNA:   3'- -CUCCUCGGGUCGCUGAGGUAGGACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.