miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25664 5' -58.3 NC_005337.1 + 1148 0.71 0.474582
Target:  5'- aGCUCcgCgGGGAGcgCGCCGGCg-- -3'
miRNA:   3'- cCGAGuaGgUCCUCaaGCGGCCGgag -5'
25664 5' -58.3 NC_005337.1 + 2901 0.7 0.561982
Target:  5'- cGGCUgcagaccaCGUCCAGGAGcggcgUCGCCGgaguGCCg- -3'
miRNA:   3'- -CCGA--------GUAGGUCCUCa----AGCGGC----CGGag -5'
25664 5' -58.3 NC_005337.1 + 3074 0.69 0.632808
Target:  5'- uGGC-CAucUCCAcGGAGgggCGCUGGcCCUCc -3'
miRNA:   3'- -CCGaGU--AGGU-CCUCaa-GCGGCC-GGAG- -5'
25664 5' -58.3 NC_005337.1 + 3842 0.66 0.789794
Target:  5'- cGGCUCga-CAGGAGgaugUCGauggucuggcaCCGGCCg- -3'
miRNA:   3'- -CCGAGuagGUCCUCa---AGC-----------GGCCGGag -5'
25664 5' -58.3 NC_005337.1 + 6210 0.69 0.612464
Target:  5'- aGGCgugCAcccugUCCAGGAGggCGUugggcacgugcaCGGCCUUg -3'
miRNA:   3'- -CCGa--GU-----AGGUCCUCaaGCG------------GCCGGAG- -5'
25664 5' -58.3 NC_005337.1 + 7478 0.68 0.663299
Target:  5'- gGGCgcgcacgaCGUCCAGGuccacgGGgcUGCCGGUCUCc -3'
miRNA:   3'- -CCGa-------GUAGGUCC------UCaaGCGGCCGGAG- -5'
25664 5' -58.3 NC_005337.1 + 9953 0.67 0.723376
Target:  5'- cGGCaacggCGUUCAGGA---CGgCGGCCUCu -3'
miRNA:   3'- -CCGa----GUAGGUCCUcaaGCgGCCGGAG- -5'
25664 5' -58.3 NC_005337.1 + 10653 0.68 0.653149
Target:  5'- aGUUCGUCUAuGGAccGcgCGCCGGCCg- -3'
miRNA:   3'- cCGAGUAGGU-CCU--CaaGCGGCCGGag -5'
25664 5' -58.3 NC_005337.1 + 14582 0.7 0.561982
Target:  5'- cGGCUCcgGUCCAcGAuggCGCCGGCCa- -3'
miRNA:   3'- -CCGAG--UAGGUcCUcaaGCGGCCGGag -5'
25664 5' -58.3 NC_005337.1 + 15839 0.71 0.475518
Target:  5'- cGGCUUcgCaCGGcGAGcgcgggcuuggcggcUCGCCGGCCUCg -3'
miRNA:   3'- -CCGAGuaG-GUC-CUCa--------------AGCGGCCGGAG- -5'
25664 5' -58.3 NC_005337.1 + 20626 0.66 0.805002
Target:  5'- --aUCGUCgCcGGAGgccguguccuucuuUUCGUCGGCCUCg -3'
miRNA:   3'- ccgAGUAG-GuCCUC--------------AAGCGGCCGGAG- -5'
25664 5' -58.3 NC_005337.1 + 22008 0.68 0.663299
Target:  5'- aGCcCAUCCGGGAcauggagcucguGUUCGCCcGGCUg- -3'
miRNA:   3'- cCGaGUAGGUCCU------------CAAGCGG-CCGGag -5'
25664 5' -58.3 NC_005337.1 + 23533 0.67 0.713505
Target:  5'- aGGCUCAUCCGGGccauGgccaucaugCgGUCGGCCg- -3'
miRNA:   3'- -CCGAGUAGGUCCu---Caa-------G-CGGCCGGag -5'
25664 5' -58.3 NC_005337.1 + 23873 0.68 0.683517
Target:  5'- gGGCauggCCAcGGuGUUCGCCuGCCUCc -3'
miRNA:   3'- -CCGaguaGGU-CCuCAAGCGGcCGGAG- -5'
25664 5' -58.3 NC_005337.1 + 29701 0.67 0.700571
Target:  5'- gGGCUCGUCCGucucGGGGUcguagagcacgcgcUCGCagaagaugCGGCuCUCg -3'
miRNA:   3'- -CCGAGUAGGU----CCUCA--------------AGCG--------GCCG-GAG- -5'
25664 5' -58.3 NC_005337.1 + 30608 0.66 0.798792
Target:  5'- cGCUCAggCAGGAGaUgGCCugcuuGGCCUg -3'
miRNA:   3'- cCGAGUagGUCCUCaAgCGG-----CCGGAg -5'
25664 5' -58.3 NC_005337.1 + 32347 0.67 0.742877
Target:  5'- aGCUCGUCCAGGAcggUCuccaggaccaGCCGGUgcUUCa -3'
miRNA:   3'- cCGAGUAGGUCCUca-AG----------CGGCCG--GAG- -5'
25664 5' -58.3 NC_005337.1 + 33807 0.66 0.798792
Target:  5'- cGCUCGUCCAGcGAGaugaguccgUCGCgaagGGCCg- -3'
miRNA:   3'- cCGAGUAGGUC-CUCa--------AGCGg---CCGGag -5'
25664 5' -58.3 NC_005337.1 + 35262 0.7 0.561982
Target:  5'- uGGCUgGUCgacaGGGAGcgCGCgaacuccaCGGCCUCg -3'
miRNA:   3'- -CCGAgUAGg---UCCUCaaGCG--------GCCGGAG- -5'
25664 5' -58.3 NC_005337.1 + 37633 0.67 0.712514
Target:  5'- uGCUCAUCCAGG----CGCCgcggucgGGCUUCa -3'
miRNA:   3'- cCGAGUAGGUCCucaaGCGG-------CCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.