miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 3' -52.7 NC_005337.1 + 52786 0.67 0.936132
Target:  5'- -cGCGUCGUGGuACGcCGCGUaCUCCGu -3'
miRNA:   3'- guUGUAGCACU-UGUcGCGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 4810 0.67 0.941074
Target:  5'- aGGCAggCGUGcAGCGGUGUGCggUCCAc -3'
miRNA:   3'- gUUGUa-GCAC-UUGUCGCGCGagAGGU- -5'
25667 3' -52.7 NC_005337.1 + 117410 0.67 0.941074
Target:  5'- aCGACAUCGUGGACuucGagaGCGUg-UCCAa -3'
miRNA:   3'- -GUUGUAGCACUUGu--Cg--CGCGagAGGU- -5'
25667 3' -52.7 NC_005337.1 + 100917 0.67 0.930935
Target:  5'- --cCGUCGUGAGCggagacgaguAGCGCGCgC-CCAg -3'
miRNA:   3'- guuGUAGCACUUG----------UCGCGCGaGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 112598 0.67 0.941074
Target:  5'- aAACGUCGUGAccagguaguGCAGCGCGagcacgugCcCCAg -3'
miRNA:   3'- gUUGUAGCACU---------UGUCGCGCga------GaGGU- -5'
25667 3' -52.7 NC_005337.1 + 3939 0.67 0.930401
Target:  5'- gCGGCGUCGagcuGCAGCaGCGCUCguacacgUCCAc -3'
miRNA:   3'- -GUUGUAGCacu-UGUCG-CGCGAG-------AGGU- -5'
25667 3' -52.7 NC_005337.1 + 22687 0.67 0.936132
Target:  5'- gGACAUgGaccUGAACGGCGCGUUCa--- -3'
miRNA:   3'- gUUGUAgC---ACUUGUCGCGCGAGaggu -5'
25667 3' -52.7 NC_005337.1 + 99718 0.67 0.936132
Target:  5'- cCAuCGUCGcGGACAG-GaCGCUCUCCc -3'
miRNA:   3'- -GUuGUAGCaCUUGUCgC-GCGAGAGGu -5'
25667 3' -52.7 NC_005337.1 + 120230 0.67 0.941074
Target:  5'- aCAGCAUCGccGAGCAGUGCGUguaCgaacCCGc -3'
miRNA:   3'- -GUUGUAGCa-CUUGUCGCGCGa--Ga---GGU- -5'
25667 3' -52.7 NC_005337.1 + 98774 0.67 0.941074
Target:  5'- gCAGCGcCGUGGAcCGGUacaacGCGCUCUCgAg -3'
miRNA:   3'- -GUUGUaGCACUU-GUCG-----CGCGAGAGgU- -5'
25667 3' -52.7 NC_005337.1 + 31083 0.67 0.948892
Target:  5'- aCGAUcgCG-GggUucagcgaggccacgAGCGCGUUCUCCAc -3'
miRNA:   3'- -GUUGuaGCaCuuG--------------UCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 75639 0.67 0.930935
Target:  5'- --cCGUCGUGAugGGCGCGU---CCGg -3'
miRNA:   3'- guuGUAGCACUugUCGCGCGagaGGU- -5'
25667 3' -52.7 NC_005337.1 + 86261 0.68 0.907576
Target:  5'- ----uUCGUGcuccGCAGCGCGCggaUCCAg -3'
miRNA:   3'- guuguAGCACu---UGUCGCGCGag-AGGU- -5'
25667 3' -52.7 NC_005337.1 + 72159 0.68 0.92548
Target:  5'- aCGGCGUCGUGAACuacaaCGgGCUCagCAa -3'
miRNA:   3'- -GUUGUAGCACUUGuc---GCgCGAGagGU- -5'
25667 3' -52.7 NC_005337.1 + 25824 0.68 0.92548
Target:  5'- aGGCGUaCGaGAAgAGCGCGCUgUUCCGg -3'
miRNA:   3'- gUUGUA-GCaCUUgUCGCGCGA-GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 2069 0.68 0.9138
Target:  5'- aGGCGagCGUGuccGCgAGCGCGCUCgacgCCAg -3'
miRNA:   3'- gUUGUa-GCACu--UG-UCGCGCGAGa---GGU- -5'
25667 3' -52.7 NC_005337.1 + 122401 0.68 0.907576
Target:  5'- aGugGUaCGUGGGCAGCGCcucgcucacggGCggCUCCAu -3'
miRNA:   3'- gUugUA-GCACUUGUCGCG-----------CGa-GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 36135 0.68 0.9138
Target:  5'- ---uGUCGUGcGCGGCGUGCgggUCCAu -3'
miRNA:   3'- guugUAGCACuUGUCGCGCGag-AGGU- -5'
25667 3' -52.7 NC_005337.1 + 2923 0.68 0.907576
Target:  5'- gCGGCGUCGccgGAgugccgacgcgcACGGCGCGCaugagcgcggUCUCCGc -3'
miRNA:   3'- -GUUGUAGCa--CU------------UGUCGCGCG----------AGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 52134 0.68 0.9138
Target:  5'- uGGCcuUCGUGGACGcgugucGCGCGCUCaugcgCCAg -3'
miRNA:   3'- gUUGu-AGCACUUGU------CGCGCGAGa----GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.