miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 3' -52.7 NC_005337.1 + 55351 0.66 0.971749
Target:  5'- aAGCG-CGUGc---GCGCGCUCUUCGa -3'
miRNA:   3'- gUUGUaGCACuuguCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 56438 0.74 0.622271
Target:  5'- gCAGCAgcgCGUGGACGGCGCGgUggCCGa -3'
miRNA:   3'- -GUUGUa--GCACUUGUCGCGCgAgaGGU- -5'
25667 3' -52.7 NC_005337.1 + 57476 0.66 0.958326
Target:  5'- -uGCAgggCGUGAACGGCGCGgUgcgCCu -3'
miRNA:   3'- guUGUa--GCACUUGUCGCGCgAga-GGu -5'
25667 3' -52.7 NC_005337.1 + 58556 0.71 0.786639
Target:  5'- gCAGCGggaUGUGGuacACGGCGaUGCUCUCCGg -3'
miRNA:   3'- -GUUGUa--GCACU---UGUCGC-GCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 61221 0.66 0.971749
Target:  5'- aCGACGguggCGaUGGacagccGCAGCGUGCcCUCCGu -3'
miRNA:   3'- -GUUGUa---GC-ACU------UGUCGCGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 63415 0.69 0.880184
Target:  5'- uGGCGcgcUCGU--ACAGCGCGCgguUCUCCGc -3'
miRNA:   3'- gUUGU---AGCAcuUGUCGCGCG---AGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 64594 0.66 0.968733
Target:  5'- aCGACuUCGUGAACAGCGUGgUg---- -3'
miRNA:   3'- -GUUGuAGCACUUGUCGCGCgAgaggu -5'
25667 3' -52.7 NC_005337.1 + 66139 0.72 0.716986
Target:  5'- aAGCG-CGUGGACGGUcCGUUCUCCGc -3'
miRNA:   3'- gUUGUaGCACUUGUCGcGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 66766 0.69 0.8874
Target:  5'- -cGCAcgCGcGGGCcgcugGGCGUGCUCUCCAa -3'
miRNA:   3'- guUGUa-GCaCUUG-----UCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 67736 0.66 0.962028
Target:  5'- gGACcggCG-GcGCGGCGCGCagCUCCAg -3'
miRNA:   3'- gUUGua-GCaCuUGUCGCGCGa-GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 67803 0.66 0.968733
Target:  5'- -cGCcUCGcugggGAACAGCGCGCgcaucaUCCGu -3'
miRNA:   3'- guUGuAGCa----CUUGUCGCGCGag----AGGU- -5'
25667 3' -52.7 NC_005337.1 + 68670 0.77 0.458595
Target:  5'- gAGCG-CGUGcAGCAGCGCGCUCUUg- -3'
miRNA:   3'- gUUGUaGCAC-UUGUCGCGCGAGAGgu -5'
25667 3' -52.7 NC_005337.1 + 68729 0.67 0.950197
Target:  5'- aGACGccCGUGcugcgcACAGUGCGC-CUCCAg -3'
miRNA:   3'- gUUGUa-GCACu-----UGUCGCGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 70884 0.66 0.965495
Target:  5'- --uCAUCGccAGCAGCgGCGC-CUCCGg -3'
miRNA:   3'- guuGUAGCacUUGUCG-CGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 72159 0.68 0.92548
Target:  5'- aCGGCGUCGUGAACuacaaCGgGCUCagCAa -3'
miRNA:   3'- -GUUGUAGCACUUGuc---GCgCGAGagGU- -5'
25667 3' -52.7 NC_005337.1 + 72224 0.67 0.936132
Target:  5'- gGGCAUCGUcGAgugGgGGCGCGC-CUUCGu -3'
miRNA:   3'- gUUGUAGCA-CU---UgUCGCGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 72954 0.66 0.968733
Target:  5'- --uCAUCGUGcugaacAGCAGCGCGgaCUUCc -3'
miRNA:   3'- guuGUAGCAC------UUGUCGCGCgaGAGGu -5'
25667 3' -52.7 NC_005337.1 + 73312 0.67 0.950197
Target:  5'- cCAGCG-CGUGGGC-GCGCGC-C-CCAu -3'
miRNA:   3'- -GUUGUaGCACUUGuCGCGCGaGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 75639 0.67 0.930935
Target:  5'- --cCGUCGUGAugGGCGCGU---CCGg -3'
miRNA:   3'- guuGUAGCACUugUCGCGCGagaGGU- -5'
25667 3' -52.7 NC_005337.1 + 80829 0.69 0.894373
Target:  5'- gAugGUCuUGAG-GGCGUGCUCUCCu -3'
miRNA:   3'- gUugUAGcACUUgUCGCGCGAGAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.