miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 3' -52.7 NC_005337.1 + 103357 0.7 0.840665
Target:  5'- gGugGUCGaGAACGGCGUGCUCg--- -3'
miRNA:   3'- gUugUAGCaCUUGUCGCGCGAGaggu -5'
25667 3' -52.7 NC_005337.1 + 103126 0.71 0.785688
Target:  5'- gCGGCAUCGUGc---GCGCGCUCuacagcgUCCAg -3'
miRNA:   3'- -GUUGUAGCACuuguCGCGCGAG-------AGGU- -5'
25667 3' -52.7 NC_005337.1 + 101433 0.77 0.439643
Target:  5'- gAACAUCGUG-GCGGUGCGCUCcaCCGa -3'
miRNA:   3'- gUUGUAGCACuUGUCGCGCGAGa-GGU- -5'
25667 3' -52.7 NC_005337.1 + 100917 0.67 0.930935
Target:  5'- --cCGUCGUGAGCggagacgaguAGCGCGCgC-CCAg -3'
miRNA:   3'- guuGUAGCACUUG----------UCGCGCGaGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 100721 0.69 0.872731
Target:  5'- -cACGUaCGUGAaguacACGGCucugguguccGCGCUCUCCGc -3'
miRNA:   3'- guUGUA-GCACU-----UGUCG----------CGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 100661 0.69 0.8874
Target:  5'- -cACAUCGUGAACcacGcCGCGUUCgcgCCGc -3'
miRNA:   3'- guUGUAGCACUUGu--C-GCGCGAGa--GGU- -5'
25667 3' -52.7 NC_005337.1 + 100243 0.67 0.936132
Target:  5'- aCGGCAagcUCGUGGAgGGCGCcgagcggguGCUcCUCCu -3'
miRNA:   3'- -GUUGU---AGCACUUgUCGCG---------CGA-GAGGu -5'
25667 3' -52.7 NC_005337.1 + 99718 0.67 0.936132
Target:  5'- cCAuCGUCGcGGACAG-GaCGCUCUCCc -3'
miRNA:   3'- -GUuGUAGCaCUUGUCgC-GCGAGAGGu -5'
25667 3' -52.7 NC_005337.1 + 98774 0.67 0.941074
Target:  5'- gCAGCGcCGUGGAcCGGUacaacGCGCUCUCgAg -3'
miRNA:   3'- -GUUGUaGCACUU-GUCG-----CGCGAGAGgU- -5'
25667 3' -52.7 NC_005337.1 + 95884 0.66 0.962028
Target:  5'- -cGCAUCGUcuAGCAGgGCGCUCgugCUc -3'
miRNA:   3'- guUGUAGCAc-UUGUCgCGCGAGa--GGu -5'
25667 3' -52.7 NC_005337.1 + 95623 0.66 0.965495
Target:  5'- gCGGCGUcCGUGGGCgcgGGCcCGCUCgCCAu -3'
miRNA:   3'- -GUUGUA-GCACUUG---UCGcGCGAGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 95014 0.66 0.958326
Target:  5'- aCAGCggCGgcuGCuGCGCGUUCUUCAc -3'
miRNA:   3'- -GUUGuaGCacuUGuCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 94343 0.68 0.919768
Target:  5'- aAGCA-CGUGAcgcuCAGCGCGCg--CCAc -3'
miRNA:   3'- gUUGUaGCACUu---GUCGCGCGagaGGU- -5'
25667 3' -52.7 NC_005337.1 + 93828 0.66 0.965495
Target:  5'- gCGGCGUCGUcAAgGGcCGUGCgCUCCGg -3'
miRNA:   3'- -GUUGUAGCAcUUgUC-GCGCGaGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 91536 0.66 0.958326
Target:  5'- aGGCGUCGgucAGCAGCGCGCggaugUUCAg -3'
miRNA:   3'- gUUGUAGCac-UUGUCGCGCGag---AGGU- -5'
25667 3' -52.7 NC_005337.1 + 89245 0.69 0.872731
Target:  5'- gAGCAUCGUGcGGCAGUccaCGCUCcCCAc -3'
miRNA:   3'- gUUGUAGCAC-UUGUCGc--GCGAGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 88466 0.66 0.962028
Target:  5'- --cCGUCGagGAGCAGaacucCGCGCUCgCCAa -3'
miRNA:   3'- guuGUAGCa-CUUGUC-----GCGCGAGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 88328 0.73 0.685758
Target:  5'- -----cCGUGcgcucCGGCGCGCUCUCCAg -3'
miRNA:   3'- guuguaGCACuu---GUCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 88248 0.66 0.971749
Target:  5'- aGACGUCGUGcgugcCGGCGCGCcggCgggcgCCGc -3'
miRNA:   3'- gUUGUAGCACuu---GUCGCGCGa--Ga----GGU- -5'
25667 3' -52.7 NC_005337.1 + 86261 0.68 0.907576
Target:  5'- ----uUCGUGcuccGCAGCGCGCggaUCCAg -3'
miRNA:   3'- guuguAGCACu---UGUCGCGCGag-AGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.