miRNA display CGI


Results 81 - 100 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25667 3' -52.7 NC_005337.1 + 88328 0.73 0.685758
Target:  5'- -----cCGUGcgcucCGGCGCGCUCUCCAg -3'
miRNA:   3'- guuguaGCACuu---GUCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 49273 0.74 0.6541
Target:  5'- gGACAUCGUGcAgGGCGUGaUCUCCGc -3'
miRNA:   3'- gUUGUAGCACuUgUCGCGCgAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 5941 0.74 0.643497
Target:  5'- cCGGCGUUGgaccGAGCAGuCGCGCUCgcgCCGc -3'
miRNA:   3'- -GUUGUAGCa---CUUGUC-GCGCGAGa--GGU- -5'
25667 3' -52.7 NC_005337.1 + 108441 0.75 0.559046
Target:  5'- gGGCuucCG-GAACAGCGCGCUCUUCu -3'
miRNA:   3'- gUUGua-GCaCUUGUCGCGCGAGAGGu -5'
25667 3' -52.7 NC_005337.1 + 68670 0.77 0.458595
Target:  5'- gAGCG-CGUGcAGCAGCGCGCUCUUg- -3'
miRNA:   3'- gUUGUaGCAC-UUGUCGCGCGAGAGgu -5'
25667 3' -52.7 NC_005337.1 + 110080 0.79 0.36859
Target:  5'- -cGCGUCuGUGAGgCAGUGCGUUCUCCGu -3'
miRNA:   3'- guUGUAG-CACUU-GUCGCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 104971 0.81 0.284488
Target:  5'- cCGGCA-CGUGAGCGGCGUgaugacccuGCUCUCCAa -3'
miRNA:   3'- -GUUGUaGCACUUGUCGCG---------CGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 89245 0.69 0.872731
Target:  5'- gAGCAUCGUGcGGCAGUccaCGCUCcCCAc -3'
miRNA:   3'- gUUGUAGCAC-UUGUCGc--GCGAGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 100721 0.69 0.872731
Target:  5'- -cACGUaCGUGAaguacACGGCucugguguccGCGCUCUCCGc -3'
miRNA:   3'- guUGUA-GCACU-----UGUCG----------CGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 127465 0.67 0.930935
Target:  5'- -cGCAcgcUCGUGGACAGCG-GCUgcgaUCCGg -3'
miRNA:   3'- guUGU---AGCACUUGUCGCgCGAg---AGGU- -5'
25667 3' -52.7 NC_005337.1 + 36135 0.68 0.9138
Target:  5'- ---uGUCGUGcGCGGCGUGCgggUCCAu -3'
miRNA:   3'- guugUAGCACuUGUCGCGCGag-AGGU- -5'
25667 3' -52.7 NC_005337.1 + 14826 0.68 0.9138
Target:  5'- gGACGcCGUGGugGGCGUcCUUUCCGc -3'
miRNA:   3'- gUUGUaGCACUugUCGCGcGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 2069 0.68 0.9138
Target:  5'- aGGCGagCGUGuccGCgAGCGCGCUCgacgCCAg -3'
miRNA:   3'- gUUGUa-GCACu--UG-UCGCGCGAGa---GGU- -5'
25667 3' -52.7 NC_005337.1 + 122401 0.68 0.907576
Target:  5'- aGugGUaCGUGGGCAGCGCcucgcucacggGCggCUCCAu -3'
miRNA:   3'- gUugUA-GCACUUGUCGCG-----------CGa-GAGGU- -5'
25667 3' -52.7 NC_005337.1 + 86261 0.68 0.907576
Target:  5'- ----uUCGUGcuccGCAGCGCGCggaUCCAg -3'
miRNA:   3'- guuguAGCACu---UGUCGCGCGag-AGGU- -5'
25667 3' -52.7 NC_005337.1 + 31879 0.69 0.894373
Target:  5'- -----cCGUGGGCAcggucuuCGCGCUCUCCAc -3'
miRNA:   3'- guuguaGCACUUGUc------GCGCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 11358 0.69 0.8874
Target:  5'- uCAGCAUCGcGcccuCgAGCGCGCUCgCCAu -3'
miRNA:   3'- -GUUGUAGCaCuu--G-UCGCGCGAGaGGU- -5'
25667 3' -52.7 NC_005337.1 + 123081 0.69 0.880184
Target:  5'- gCGAUAUCGUGAACca---GCUCUCCGc -3'
miRNA:   3'- -GUUGUAGCACUUGucgcgCGAGAGGU- -5'
25667 3' -52.7 NC_005337.1 + 30737 0.69 0.880184
Target:  5'- ---aGUCGU--ACAGCGCGCgCUCCu -3'
miRNA:   3'- guugUAGCAcuUGUCGCGCGaGAGGu -5'
25667 3' -52.7 NC_005337.1 + 63415 0.69 0.880184
Target:  5'- uGGCGcgcUCGU--ACAGCGCGCgguUCUCCGc -3'
miRNA:   3'- gUUGU---AGCAcuUGUCGCGCG---AGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.